Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007324

Physical Location & Seq

Genomic Coordinates Forward (+)

5592368 .. 5594319

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTGATCAAGGAGGTAATGGTACTAGTAGTGTTATTATGAGGGACTATAGGAAAGGGAACTGGACAGTGGGGGAGACAATGATTCTGATTGAGGCAAAGAAGATGGATGATGAGAGAAGAATGAAGAGAAGCGGGGATGCTGCAGGTAGTGAAACAAGATCAAGCAAACCAGCTGAGCTCAGATGGAAATGGGTAGAAGATTACTGTTGGAAGAAAGGGTGTTTGAGAAGCCAAAACCAGTGCAATGACAAATGGGACAATCTCATGAGGGATTACAAGAAGGTGAGGGAATATGAGAGGAGGGAAGGGAGGGAAGAAGCAGCATCTTATTGGAAGCTTGAGAAGAGTGAGAGGAAAGATAGGAACTTGCCTACCAACATGGTGCCTCAGATATATGAGGCTTTGGTTGATGTGGTGGAGAAGAGAGAAGCAGGCCATCATCAGATCAGAGTGGTAGGTGGAGCTTCTGTTTCTGGTTCCAATGTTCCCAATCCCACCATTGGATATGTTGTGGAGAGGCCTATTATAAGCACTAGTGTTCATCAGGCTTCACTGCCTCCTCCAGTTTTGCAACATCACATCTCAGTTCCACCAATTGCAGCATTGCCTCTTCTACCCCCAGCTCCATTAGCAGCTCAACCACCACCTACTCTTCCATACTCACAACCTATGCCCACAGTAGATTCTGAGACAAGCCATGAACATTCAGACTCACCAGCCAAAAGGAGGAGAAGGGCGAGTGGAGGTGGAGGAGGAGGTGGAGATCAAGGAACCAGTGGAACTGTGAGTGCAAGCACCTCAAGTGAAGTGGGCACTGCCATCTCCAGAGGTGCTTCCATGATTGCAGAAGCACTTCAGGGTTGTGAGGAGAGAGAAGAGAGAAGGCACAGAGATCTTTTGAGTTTGCATGAGAGAAGGCTACAGATTGAGGAAACTAAAACTGAGATCAACAGGCAAGGCATTAATGGTCTCATCGATGCCATTAACAAGCTAGCAGATTCTATCCATGCCTTGGCTTCCAACAAGAACCAATCACCTCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

350

Amino Acids

38.59

Weight (kDa)

8.77

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31310 AT2G35640
fragaria_vesca	FvH4_3g11900 FvH4_3g11900 FvH4_3g11900 FvH4_3g11900
malus_domestica	MD05G1256800.v1.1 MD10G1237300.v1.1
prunus_persica	Prupe.4G107000_v2.0.a1
pyrus_communis	pycom05g23610
rosa_chinensis	RchiOBHm_Chr5g0019411
rosa_laevigata	RLG00000032442
rosa_multiflora	Rmu_co8327627.1_g000001 Rmu_co8471075.1_g000001 Rmu_sc0002759.1_g000041 Rmu_sc0005292.1_g000052
rosa_roxburghii	Rroxscaffold_1G00058630 Rroxscaffold_1G00074290
rosa_rugosa	Rorug05G0050800 Rorug05G0050900
rosa_samantha	Rh5AG141100 Rh5BG140100 Rh5CG151700 Rh5DG140700
rosa_wichuraiana	Rw5G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AciI	CCGC	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	842
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	3 cut(s)	503, 729, 1015
AhlI	ACTAGT	2 cut(s)	26, 536
AluBI	AGCT	7 cut(s)	176, 181, 340, 467, 626, 638, 994
AluI	AGCT	7 cut(s)	176, 181, 340, 467, 626, 638, 994
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	3 cut(s)	71, 686, 977
AoxI	GGCC	2 cut(s)	436, 521
ApeKI	GCWGC	4 cut(s)	143, 323, 602, 635
AseI	ATTAAT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	855
AsuHPI	GGTGA	3 cut(s)	298, 708, 1029
AsuNHI	GCTAGC	1 cut(s)	994
BaeGI	GKGCMC	1 cut(s)	818
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	4 cut(s)	130, 335, 614, 647
BccI	CCATC	4 cut(s)	100, 180, 447, 830
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	3 cut(s)	71, 686, 977
BcuI	ACTAGT	2 cut(s)	26, 536
BfaI	CTAG	3 cut(s)	27, 537, 995
BfmI	CTRYAG	3 cut(s)	49, 144, 923
BfuAI	ACCTGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	4 cut(s)	144, 324, 603, 636
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	4 cut(s)	145, 325, 604, 637
BmiI	GGNNCC	3 cut(s)	387, 481, 775
BmsI	GCATC	3 cut(s)	130, 335, 970
BmtI	GCTAGC	1 cut(s)	998
BpmI	CTGGAG	2 cut(s)	549, 811
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	362, 787
Bsa29I	ATCGAT	1 cut(s)	978
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	1 cut(s)	1014
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 729, 1015
Bse1I	ACTGG	4 cut(s)	68, 241, 566, 777
Bse3DI	GCAATG	2 cut(s)	253, 605
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	1014
BseGI	GGATG	2 cut(s)	115, 145
BseLI	CCNNNNNNNGG	3 cut(s)	503, 729, 1015
BseMI	GCAATG	2 cut(s)	253, 605
BseMII	CTCAG	6 cut(s)	168, 196, 404, 600, 681, 936
BseNI	ACTGG	4 cut(s)	68, 241, 566, 777
BseRI	GAGGAG	6 cut(s)	316, 552, 745, 768, 771, 884
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	4 cut(s)	130, 335, 614, 647
BseYI	CCCAGC	1 cut(s)	622
BshFI	GGCC	2 cut(s)	438, 523
BshNI	GGYRCC	1 cut(s)	385
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	59, 272
BslI	CCNNNNNNNGG	3 cut(s)	503, 729, 1015
BsmAI	GTCTC	3 cut(s)	71, 686, 977
BsmFI	GGGAC	2 cut(s)	59, 272
BsnI	GGCC	2 cut(s)	438, 523
Bso31I	GGTCTC	1 cut(s)	977
Bsp1286I	GDGCHC	2 cut(s)	183, 818
Bsp143I	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	438, 523
BspCNI	CTCAG	6 cut(s)	169, 195, 403, 599, 682, 937
BspDI	ATCGAT	1 cut(s)	978
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	387, 481, 775
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	998
BspT107I	GGYRCC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	2 cut(s)	253, 605
BsrI	ACTGG	4 cut(s)	68, 241, 566, 777
BssECI	CCNNGG	1 cut(s)	1014
BssMI	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
BssT1I	CCWWGG	1 cut(s)	1014
Bst4CI	ACNGT	4 cut(s)	70, 209, 682, 787
Bst6I	CTCTTC	6 cut(s)	122, 341, 419, 618, 660, 873
BstC8I	GCNNGC	3 cut(s)	436, 796, 996
BstDEI	CTNAG	6 cut(s)	177, 182, 390, 586, 690, 945
BstF5I	GGATG	2 cut(s)	115, 145
BstKTI	GATC	6 cut(s)	10, 164, 450, 769, 898, 951
BstMAI	GTCTC	3 cut(s)	71, 686, 977
BstMBI	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstSFI	CTRYAG	3 cut(s)	49, 144, 923
BstSLI	GKGCMC	1 cut(s)	818
BstV1I	GCAGC	4 cut(s)	130, 335, 614, 647
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	978
BsuRI	GGCC	2 cut(s)	438, 523
BsuTUI	ATCGAT	1 cut(s)	978
BtsCI	GGATG	2 cut(s)	115, 145
BtsI	GCAGTG	2 cut(s)	554, 816
BtsIMutI	CAGTG	5 cut(s)	75, 248, 554, 784, 816
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	436, 796, 996
CciI	TCATGA	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	792, 827
CviAII	CATG	6 cut(s)	268, 382, 701, 841, 911, 1010
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	6 cut(s)	177, 182, 390, 586, 690, 945
DpnI	GATC	6 cut(s)	9, 163, 449, 768, 897, 950
DpnII	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
Eam1104I	CTCTTC	6 cut(s)	122, 341, 419, 618, 660, 873
EarI	CTCTTC	6 cut(s)	122, 341, 419, 618, 660, 873
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	1014
Eco147I	AGGCCT	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	977
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	1014
FaeI	CATG	6 cut(s)	271, 385, 704, 844, 914, 1013
FaqI	GGGAC	2 cut(s)	59, 272
FatI	CATG	6 cut(s)	267, 381, 700, 840, 910, 1009
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	144, 324, 603, 636
FokI	GGATG	2 cut(s)	122, 152
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	4 cut(s)	144, 324, 603, 636
FspBI	CTAG	3 cut(s)	27, 537, 995
GluI	GCNGC	4 cut(s)	144, 324, 603, 636
GsaI	CCCAGC	1 cut(s)	626
GsuI	CTGGAG	2 cut(s)	549, 811
HaeIII	GGCC	2 cut(s)	438, 523
Hin1II	CATG	6 cut(s)	271, 385, 704, 844, 914, 1013
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	4 cut(s)	85, 686, 713, 1001
HphI	GGTGA	3 cut(s)	298, 708, 1029
Hpy188I	TCNGA	7 cut(s)	90, 185, 393, 447, 452, 691, 712
Hpy188III	TCNNGA	2 cut(s)	268, 828
HpyAV	CCTTC	5 cut(s)	277, 302, 729, 879, 912
HpyCH4III	ACNGT	4 cut(s)	70, 209, 682, 787
HpyCH4V	TGCA	7 cut(s)	146, 246, 574, 602, 794, 848, 910
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	6 cut(s)	177, 182, 390, 586, 690, 945
Hsp92II	CATG	6 cut(s)	271, 385, 704, 844, 914, 1013
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
LmnI	GCTCC	2 cut(s)	464, 631
Lsp1109I	GCAGC	4 cut(s)	130, 335, 614, 647
LweI	GCATC	3 cut(s)	130, 335, 970
MaeI	CTAG	3 cut(s)	27, 537, 995
MalI	GATC	6 cut(s)	9, 163, 449, 768, 897, 950
MboI	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	2 cut(s)	183, 818
MluCI	AATT	1 cut(s)	597
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	2 cut(s)	191, 1047
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	2 cut(s)	966, 987
MspA1I	CMGCKG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
NheI	GCTAGC	1 cut(s)	994
NlaIII	CATG	6 cut(s)	271, 385, 704, 844, 914, 1013
NlaIV	GGNNCC	3 cut(s)	387, 481, 775
PagI	TCATGA	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	85, 686, 1001
PflMI	CCANNNNNTGG	1 cut(s)	1015
PkrI	GCNGC	4 cut(s)	145, 325, 604, 637
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PshBI	ATTAAT	1 cut(s)	966
PsiI	TTATAA	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	387, 481, 775
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	895
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	966, 987
SatI	GCNGC	4 cut(s)	144, 324, 603, 636
Sau3AI	GATC	6 cut(s)	7, 161, 447, 766, 895, 948
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	2 cut(s)	183, 818
SfaNI	GCATC	3 cut(s)	130, 335, 970
SfcI	CTRYAG	3 cut(s)	49, 144, 923
SmlI	CTYRAG	2 cut(s)	341, 802
SmoI	CTYRAG	2 cut(s)	341, 802
SpeI	ACTAGT	2 cut(s)	26, 536
Sse9I	AATT	1 cut(s)	597
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	3 cut(s)	27, 537, 995
SstI	GAGCTC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	4 cut(s)	70, 209, 682, 787
TaqI	TCGA	1 cut(s)	978
TasI	AATT	1 cut(s)	597
TfiI	GAWTC	3 cut(s)	85, 686, 1001
Tru1I	TTAA	2 cut(s)	966, 987
Tru9I	TTAA	2 cut(s)	966, 987
TscAI	CASTG	5 cut(s)	75, 248, 561, 784, 823
TseI	GCWGC	4 cut(s)	143, 323, 602, 635
TspDTI	ATGAA	3 cut(s)	140, 533, 717
TspRI	CASTG	5 cut(s)	75, 248, 561, 784, 823
Van91I	CCANNNNNTGG	1 cut(s)	1015
VspI	ATTAAT	1 cut(s)	966
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	3 cut(s)	27, 537, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.