AT1G31310
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007324
Physical Location & Seq
Reverse (-)
11198353 .. 11200141
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31310.1

Sequence Viewer

Length: 1152 bp
ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGCAACTGGACGTTGAATGAGACGATGGTTCTCATTGAGGCCAAGAGGATGGATGATGAGAGGAGGATGCGGCGGTCCATCGGCCTTCCACCGCCGGAGCAGCAACAAGATATCCGGAGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGGTTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAAAAAAGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTATTACCGCCGGTGAGTCGTCTTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTACTGGAAGATGGAGAAGAGTGAGAGGAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGTTGTTGAGAGTAAAACGCTTCCTTCTTCTACCGCCGTAACCGCTGTAACCGCTGCAGTTGCGGCTGCTGCTGCTGCTATTAGTAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGTGATACAACAAGGTTTAGGATTTGTTGTTCCTAAAGTACATCAAATCATTCAGCAGCAACCTGTTTTGTTACCACTTCAGCCACCGCCGCCACCACCACCGTCTCAGCCGTTACCACGACCACTACTACTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCCAATACTGCCCACAAAGGATAGTAGCACAGATTCTGATACAAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAGGAGAACAATGCCGACAACCACAACCGCCGGTCCCAGCGGCGGCGGTGTAGATGTGGAGGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGGAGTGTGTCAGTGATCGCAAACGCGATTAGGGAGAGTGAGGAGAGACAAGATCGGAGACATAAAGAAGTGATGAACGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAATAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAATAAGCTAGCTAGCTCCATTTTCGCTCTGGCTTCTTCTTCTCGCCATAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

383

Amino Acids

42.59

Weight (kDa)

9.13

Isoelectric Point (pI)

81.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 18 - 107 3.4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 962
AccIII TCCGGA 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 336, 644
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 5 cut(s) 41, 299, 380, 621, 1017
AfiI CCNNNNNNNGG 1 cut(s) 863
AgsI TTSAA 2 cut(s) 64, 461
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
AluBI AGCT 8 cut(s) 184, 356, 362, 417, 452, 1102, 1106, 1110
AluI AGCT 8 cut(s) 184, 356, 362, 417, 452, 1102, 1106, 1110
Alw26I GTCTC 8 cut(s) 62, 270, 298, 690, 905, 976, 988, 1021
AlwNI CAGNNNCTG 1 cut(s) 782
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 2 cut(s) 87, 130
ApeKI GCWGC 8 cut(s) 148, 515, 527, 530, 533, 536, 637, 926
AseI ATTAAT 1 cut(s) 1095
Asp700I GAANNNNTTC 1 cut(s) 556
AspS9I GGNCC 2 cut(s) 123, 854
AsuHPI GGTGA 1 cut(s) 347
AsuNHI GCTAGC 2 cut(s) 1102, 1106
AvaII GGWCC 2 cut(s) 123, 854
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 8 cut(s) 160, 502, 514, 517, 520, 523, 649, 913
BccI CCATC 4 cut(s) 67, 91, 134, 382
BceAI ACGGC 3 cut(s) 387, 482, 676
BcoDI GTCTC 8 cut(s) 62, 270, 298, 690, 905, 976, 988, 1021
BfaI CTAG 2 cut(s) 1103, 1107
BfmI CTRYAG 1 cut(s) 516
BlpI GCTNAGC 1 cut(s) 744
Bme18I GGWCC 2 cut(s) 123, 854
BmgT120I GGNCC 2 cut(s) 123, 854
BmiI GGNNCC 1 cut(s) 856
BmsI GCATC 1 cut(s) 105
BmtI GCTAGC 2 cut(s) 1106, 1110
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 2 cut(s) 342, 384
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 1016
BsaHI GRCGYC 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse118I RCCGGY 3 cut(s) 175, 332, 851
Bse1I ACTGG 2 cut(s) 59, 386
Bse3DI GCAATG 1 cut(s) 256
BseAI TCCGGA 1 cut(s) 162
BseGI GGATG 3 cut(s) 102, 106, 120
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 701, 758
BseNI ACTGG 2 cut(s) 59, 386
BseRI GAGGAG 4 cut(s) 124, 896, 992, 1039
BseXI GCAGC 8 cut(s) 160, 502, 514, 517, 520, 523, 649, 913
BseYI CCCAGC 1 cut(s) 857
Bsh1236I CGCG 1 cut(s) 962
BshFI GGCC 2 cut(s) 89, 132
BsiSI CCGG 6 cut(s) 143, 163, 176, 333, 812, 852
BslFI GGGAC 2 cut(s) 275, 840
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 8 cut(s) 62, 270, 298, 690, 905, 976, 988, 1021
BsmBI CGTCTC 4 cut(s) 62, 298, 690, 905
BsmFI GGGAC 2 cut(s) 275, 840
BsnI GGCC 2 cut(s) 89, 132
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 3 cut(s) 951, 988, 1035
Bsp1720I GCTNAGC 1 cut(s) 744
BspANI GGCC 2 cut(s) 89, 132
BspCNI CTCAG 2 cut(s) 700, 757
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 1 cut(s) 962
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 856
BspMAI CTGCAG 1 cut(s) 520
BspOI GCTAGC 2 cut(s) 1106, 1110
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 3 cut(s) 175, 332, 851
BsrI ACTGG 2 cut(s) 59, 386
BssAI RCCGGY 3 cut(s) 175, 332, 851
BssMI GATC 3 cut(s) 951, 988, 1035
BssNI GRCGYC 1 cut(s) 374
Bst4CI ACNGT 5 cut(s) 189, 212, 557, 684, 919
Bst6I CTCTTC 3 cut(s) 389, 812, 903
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 1104, 1108
BstDEI CTNAG 2 cut(s) 687, 744
BstF5I GGATG 3 cut(s) 102, 106, 120
BstFNI CGCG 1 cut(s) 962
BstKTI GATC 3 cut(s) 954, 991, 1038
BstMAI GTCTC 8 cut(s) 62, 270, 298, 690, 905, 976, 988, 1021
BstMBI GATC 3 cut(s) 951, 988, 1035
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 8 cut(s) 160, 502, 514, 517, 520, 523, 649, 913
BstV2I GAAGAC 1 cut(s) 336
BstXI CCANNNNNNTGG 2 cut(s) 17, 97
BsuRI GGCC 2 cut(s) 89, 132
BtsCI GGATG 3 cut(s) 102, 106, 120
BtsIMutI CAGTG 2 cut(s) 251, 954
Cac8I GCNNGC 2 cut(s) 1104, 1108
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 1 cut(s) 270
Cfr10I RCCGGY 3 cut(s) 175, 332, 851
Cfr13I GGNCC 2 cut(s) 123, 854
CseI GACGC 1 cut(s) 363
Csp6I GTAC 5 cut(s) 40, 298, 379, 620, 1016
CviAII CATG 3 cut(s) 271, 740, 1072
CviQI GTAC 5 cut(s) 40, 298, 379, 620, 1016
DdeI CTNAG 2 cut(s) 687, 744
DpnI GATC 3 cut(s) 953, 990, 1037
DpnII GATC 3 cut(s) 951, 988, 1035
Eam1104I CTCTTC 3 cut(s) 389, 812, 903
EarI CTCTTC 3 cut(s) 389, 812, 903
EciI GGCGGA 1 cut(s) 194
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 123, 854
Eco57I CTGAAG 2 cut(s) 336, 644
EcoRV GATATC 1 cut(s) 160
Esp3I CGTCTC 4 cut(s) 62, 298, 690, 905
FaeI CATG 3 cut(s) 274, 743, 1075
FaiI YATR 9 cut(s) 29, 230, 272, 431, 445, 741, 999, 1073, 1143
FaqI GGGAC 2 cut(s) 275, 840
FatI CATG 3 cut(s) 270, 739, 1071
FokI GGATG 3 cut(s) 109, 113, 127
FspBI CTAG 2 cut(s) 1103, 1107
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 2 cut(s) 342, 384
HaeIII GGCC 2 cut(s) 89, 132
HapII CCGG 6 cut(s) 143, 163, 176, 333, 812, 852
HgaI GACGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 3 cut(s) 274, 743, 1075
HindIII AAGCTT 2 cut(s) 415, 450
HinfI GANTC 6 cut(s) 241, 317, 338, 779, 1029, 1043
HpaII CCGG 6 cut(s) 143, 163, 176, 333, 812, 852
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 4 cut(s) 240, 784, 802, 993
Hpy188III TCNNGA 3 cut(s) 163, 271, 1033
Hpy8I GTNNAC 1 cut(s) 569
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 6 cut(s) 143, 303, 495, 741, 816, 1061
HpyCH4III ACNGT 5 cut(s) 189, 212, 557, 684, 919
HpyCH4IV ACGT 3 cut(s) 59, 892, 1014
HpyCH4V TGCA 2 cut(s) 249, 518
HpyF3I CTNAG 2 cut(s) 687, 744
HpySE526I ACGT 3 cut(s) 59, 892, 1014
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 3 cut(s) 274, 743, 1075
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 951, 988, 1035
LmnI GCTCC 4 cut(s) 145, 181, 361, 1115
Lsp1109I GCAGC 8 cut(s) 160, 502, 514, 517, 520, 523, 649, 913
LweI GCATC 1 cut(s) 105
MaeI CTAG 2 cut(s) 1103, 1107
MaeII ACGT 3 cut(s) 59, 892, 1014
MaeIII GTNAC 5 cut(s) 432, 499, 508, 651, 693
MalI GATC 3 cut(s) 953, 990, 1037
MboI GATC 3 cut(s) 951, 988, 1035
MluCI AATT 1 cut(s) 1147
MlyI GAGTC 2 cut(s) 347, 1023
MmeI TCCRAC 2 cut(s) 194, 868
MroI TCCGGA 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 556
MseI TTAA 1 cut(s) 1095
MspA1I CMGCKG 4 cut(s) 362, 506, 515, 861
MspI CCGG 6 cut(s) 143, 163, 176, 333, 812, 852
MvnI CGCG 1 cut(s) 962
NdeII GATC 3 cut(s) 951, 988, 1035
NheI GCTAGC 2 cut(s) 1102, 1106
NlaIII CATG 3 cut(s) 274, 743, 1075
NlaIV GGNNCC 1 cut(s) 856
PagI TCATGA 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 556
PfeI GAWTC 4 cut(s) 241, 317, 779, 1043
PleI GAGTC 2 cut(s) 346, 1023
PpsI GAGTC 2 cut(s) 346, 1023
PshBI ATTAAT 1 cut(s) 1095
PspFI CCCAGC 1 cut(s) 857
PspN4I GGNNCC 1 cut(s) 856
PspPI GGNCC 2 cut(s) 123, 854
PstI CTGCAG 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 5 cut(s) 41, 299, 380, 621, 1017
RsaNI GTAC 5 cut(s) 40, 298, 379, 620, 1016
SaqAI TTAA 1 cut(s) 1095
Sau3AI GATC 3 cut(s) 951, 988, 1035
Sau96I GGNCC 2 cut(s) 123, 854
SchI GAGTC 2 cut(s) 347, 1023
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 332
SinI GGWCC 2 cut(s) 123, 854
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 1 cut(s) 1147
SspMI CTAG 2 cut(s) 1103, 1107
TaaI ACNGT 5 cut(s) 189, 212, 557, 684, 919
TaiI ACGT 3 cut(s) 62, 895, 1017
TaqI TCGA 1 cut(s) 1038
TasI AATT 1 cut(s) 1147
TatI WGTACW 2 cut(s) 39, 619
TauI GCSGC 6 cut(s) 121, 527, 673, 864, 867, 926
TfiI GAWTC 4 cut(s) 241, 317, 779, 1043
Tru1I TTAA 1 cut(s) 1095
Tru9I TTAA 1 cut(s) 1095
TscAI CASTG 2 cut(s) 251, 954
TseI GCWGC 8 cut(s) 148, 515, 527, 530, 533, 536, 637, 926
TspDTI ATGAA 6 cut(s) 336, 728, 921, 1025, 1073, 1088
TspRI CASTG 2 cut(s) 251, 954
VpaK11BI GGWCC 2 cut(s) 123, 854
VspI ATTAAT 1 cut(s) 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XmnI GAANNNNTTC 1 cut(s) 556
XspI CTAG 2 cut(s) 1103, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.