Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471075.1

Orthogroup ID

OG0007324

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 505

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471075.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

acatgtgaaggctcagattctgatacaagtgagcattcagactcaacagccaaaaggaggaggagaggaggaggagcaagtggtggaggtggagatcagcagcaggggatcagtaccagtgggactgtgagcgcaagcacctcaagtgaattgggcactgctatttccagaggagcttccataattgcagaagctcttcagggctgtgaggagagtgaagagaggaggcacagagagattttgagtttgcatgagaggaggattcagattgaagagtctaaaactgagatcaacaggcaaggaatcaatggccttgttgatgccattaacaaacttgctaattccatccatgccttggcttccaacagcaaccaatcttcagctccaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

130

Amino Acids

13.6

Weight (kDa)

5.79

Isoelectric Point (pI)

76.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31310 AT2G35640
fragaria_vesca	FvH4_3g11900 FvH4_3g11900 FvH4_3g11900 FvH4_3g11900
malus_domestica	MD05G1256800.v1.1 MD10G1237300.v1.1
prunus_persica	Prupe.4G107000_v2.0.a1
pyrus_communis	pycom05g23610
rosa_chinensis	RchiOBHm_Chr5g0019411
rosa_laevigata	RLG00000032442
rosa_multiflora	Rmu_co8327627.1_g000001 Rmu_co8471075.1_g000001 Rmu_sc0002759.1_g000041 Rmu_sc0005292.1_g000052
rosa_roxburghii	Rroxscaffold_1G00058630 Rroxscaffold_1G00074290
rosa_rugosa	Rorug05G0050800 Rorug05G0050900
rosa_samantha	Rh5AG141100 Rh5BG140100 Rh5CG151700 Rh5DG140700
rosa_wichuraiana	Rw5G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	355
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	2 cut(s)	182, 363
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	57, 355
AflIII	ACRYGT	1 cut(s)	2
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	3 cut(s)	176, 194, 383
AluI	AGCT	3 cut(s)	176, 194, 383
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	353
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 355
Bse1I	ACTGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	57, 355
BseMII	CTCAG	2 cut(s)	27, 276
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	9 cut(s)	73, 76, 81, 84, 87, 186, 224, 238, 271
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	57, 355
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	94, 108, 288
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	26, 277
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	94, 108, 288
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	3 cut(s)	201, 213, 267
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	13, 285
BstF5I	GGATG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	97, 111, 291
BstMBI	GATC	3 cut(s)	94, 108, 288
BstNSI	RCATGY	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	124, 156
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	3, 251, 350
CviJI	RGCY	8 cut(s)	12, 50, 176, 194, 204, 312, 359, 383
CviKI_1	RGCY	8 cut(s)	12, 50, 176, 194, 204, 312, 359, 383
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	13, 285
DpnI	GATC	3 cut(s)	96, 110, 290
DpnII	GATC	3 cut(s)	94, 108, 288
Eam1104I	CTCTTC	3 cut(s)	201, 213, 267
EarI	CTCTTC	3 cut(s)	201, 213, 267
Eco130I	CCWWGG	1 cut(s)	354
Eco57I	CTGAAG	2 cut(s)	182, 363
EcoT14I	CCWWGG	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	3 cut(s)	6, 254, 353
FaiI	YATR	4 cut(s)	4, 182, 252, 351
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	2, 250, 349
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	6, 254, 353
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	5 cut(s)	17, 41, 262, 275, 303
Hpy188I	TCNGA	4 cut(s)	16, 22, 40, 267
Hpy188III	TCNNGA	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	188, 250
HpyF3I	CTNAG	2 cut(s)	13, 285
Hsp92II	CATG	3 cut(s)	6, 254, 353
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	94, 108, 288
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	3 cut(s)	74, 173, 388
LpnPI	CCDG	5 cut(s)	89, 130, 181, 185, 280
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	310
MalI	GATC	3 cut(s)	96, 110, 290
MboI	GATC	3 cut(s)	94, 108, 288
MboII	GAAGA	4 cut(s)	188, 230, 284, 369
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	3 cut(s)	149, 183, 340
MlyI	GAGTC	2 cut(s)	35, 284
MmeI	TCCRAC	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	34
NdeII	GATC	3 cut(s)	94, 108, 288
NlaIII	CATG	3 cut(s)	6, 254, 353
NspI	RCATGY	1 cut(s)	6
PciI	ACATGT	1 cut(s)	2
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	17, 262, 303
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	35, 283
PpsI	GAGTC	2 cut(s)	35, 283
PscI	ACATGT	1 cut(s)	2
PstNI	CAGNNNCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	3 cut(s)	94, 108, 288
SchI	GAGTC	2 cut(s)	35, 284
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	5 cut(s)	91, 143, 178, 196, 385
SfaNI	GCATC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	3 cut(s)	149, 183, 340
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	3 cut(s)	149, 183, 340
TfiI	GAWTC	3 cut(s)	17, 262, 303
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	124, 163
TseI	GCWGC	1 cut(s)	100
TspRI	CASTG	2 cut(s)	124, 163
Van91I	CCANNNNNTGG	1 cut(s)	355
XceI	RCATGY	1 cut(s)	6
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.