Rh5BG140100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007324
Physical Location & Seq
Forward (+)
14486987 .. 14489910
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG140100.1

Sequence Viewer

Length: 1107 bp
ATGGCTGAAATTCAAGGAGGGAACAGTGGCAGTTTTGTAATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGGTTCTGATTGAGGCAAAGAAGATGGATGAGGAGAGAAGAATAATGAAGAGAAGTGGTAGTGGTAGTGGTAGTGGGGATCATGGGGCTGATCAGACCCCCAGATCAATAAGCAAACCAGCTGAGCTGAGATGGAAATGGGTGGAAGACTATTGCTGGAAGAAAGGGTGCTTGAGAAGCCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGACTACAAGAAAGTGAGGGAGTATGAGAAGAGAAGTGTAGGGGTGGGAGATAATAAGGAGTTGGCATCTTACTGGAAGCTTGAGAAGAGTGAGAGGAAGGAGAGGAACTTGCCCACAAATATGGTGCCTCAGATTTATGAGGCTTTGGTTGAGGTGGTGGAGAAGAGAGAGATGGGTAGAATTGTGGTCGGTGGTGGTGGTGCTTCTGTTTCTGGGTCCATTAGTCCCAACCCCAACATTGGATATGCGGTGGAGAGACCCATAATTAGTGGCATCCATCAGTCTACAGTGCTTTCTCCTCCTCCTGTGCTGCAACAGCACCTGATCCAACCACAACCAATTTCAGCAATGCATCTTTTACCAGCACCATTGGCAGCTCAACCACCACCTCCTCTTCCATATTCTCAACCTATTCCCCCAGTAGGCTCAGATTCTGATACAAGTGAGCATTCAGACTCAACAGCCAAGAGGAGGAGGAGAGGAGGAGGAGCAAGTGGTGGAGGTGGAGATCAGCAGCAGGGGATCAGTACCAGTGGGACTATGAGTGCAAGCACCTCAAGTGAATTGGGCACTGCTATTTCCAGAGGAGCTTCCATCATTGCAGAAGCTCTTCAGGGCTGTGAGGAGAGTGAAGAGAGGAGGCACAGAGAGATTTTGAGTTTGCATGAGAGGAGGATTCAGATTGAAGAGTCTAAAACTGAGATCAACAGGCAAGGAATCAATGGCCTTGTTGATGCCATTAACAAACTTGCTAATTCCATCCATGCCTTGGCTTCCAACAGCAACCAATCTTCAGCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

368

Amino Acids

40.22

Weight (kDa)

8.76

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 113 6.6e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 1069
AccI GTMKAC 1 cut(s) 584
AciI CCGC 1 cut(s) 548
AclWI GGATC 3 cut(s) 168, 619, 830
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 896, 1077
AfaI GTAC 1 cut(s) 829
AfiI CCNNNNNNNGG 4 cut(s) 539, 722, 771, 1069
AgsI TTSAA 2 cut(s) 14, 986
AluBI AGCT 7 cut(s) 203, 208, 379, 677, 890, 908, 1097
AluI AGCT 7 cut(s) 203, 208, 379, 677, 890, 908, 1097
Alw26I GTCTC 2 cut(s) 71, 550
AlwI GGATC 3 cut(s) 168, 619, 830
AlwNI CAGNNNCTG 2 cut(s) 622, 734
AoxI GGCC 1 cut(s) 1024
ApeKI GCWGC 3 cut(s) 610, 674, 814
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 909
AspS9I GGNCC 1 cut(s) 516
AvaII GGWCC 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 872
BanI GGYRCC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 597, 686, 826
BccI CCATC 6 cut(s) 100, 207, 466, 585, 902, 1067
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 71, 550
BfmI CTRYAG 2 cut(s) 49, 585
BisI GCNGC 3 cut(s) 611, 675, 815
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 3 cut(s) 612, 676, 816
Bme18I GGWCC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 426, 517
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 4 cut(s) 374, 582, 661, 1024
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 3 cut(s) 274, 401, 841
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 1068
Bsc4I CCNNNNNNNGG 4 cut(s) 539, 722, 771, 1069
Bse1I ACTGG 5 cut(s) 68, 268, 377, 719, 831
Bse3DI GCAATG 3 cut(s) 280, 654, 897
BseDI CCNNGG 1 cut(s) 1068
BseGI GGATG 3 cut(s) 115, 573, 1059
BseLI CCNNNNNNNGG 4 cut(s) 539, 722, 771, 1069
BseMI GCAATG 3 cut(s) 280, 654, 897
BseMII CTCAG 5 cut(s) 195, 200, 443, 741, 990
BseNI ACTGG 5 cut(s) 68, 268, 377, 719, 831
BseSI GKGCMC 1 cut(s) 872
BseXI GCAGC 3 cut(s) 597, 686, 826
BshFI GGCC 1 cut(s) 1026
BshNI GGYRCC 1 cut(s) 424
BslFI GGGAC 5 cut(s) 59, 299, 314, 510, 850
BslI CCNNNNNNNGG 4 cut(s) 539, 722, 771, 1069
BsmAI GTCTC 2 cut(s) 71, 550
BsmFI GGGAC 5 cut(s) 59, 299, 314, 510, 850
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 1 cut(s) 1026
Bso31I GGTCTC 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 872
Bsp143I GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 1026
BspCNI CTCAG 5 cut(s) 196, 201, 442, 740, 991
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 426, 517
BspPI GGATC 3 cut(s) 168, 619, 830
BspQI GCTCTTC 1 cut(s) 915
BspT107I GGYRCC 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 550
BsrDI GCAATG 3 cut(s) 280, 654, 897
BsrI ACTGG 5 cut(s) 68, 268, 377, 719, 831
BssECI CCNNGG 1 cut(s) 1068
BssMI GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
BssT1I CCWWGG 1 cut(s) 1068
Bst4CI ACNGT 3 cut(s) 26, 70, 589
Bst6I CTCTTC 8 cut(s) 125, 323, 380, 458, 699, 915, 927, 981
BstC8I GCNNGC 1 cut(s) 850
BstDEI CTNAG 5 cut(s) 204, 209, 429, 727, 999
BstF5I GGATG 3 cut(s) 115, 573, 1059
BstKTI GATC 7 cut(s) 163, 175, 188, 627, 811, 825, 1005
BstMAI GTCTC 2 cut(s) 71, 550
BstMBI GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 258, 616, 671
BstSFI CTRYAG 2 cut(s) 49, 585
BstSLI GKGCMC 1 cut(s) 872
BstV1I GCAGC 3 cut(s) 597, 686, 826
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 421
BsuRI GGCC 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 115, 573, 1059
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 6 cut(s) 31, 75, 275, 594, 838, 870
Cac8I GCNNGC 1 cut(s) 850
CaiI CAGNNNCTG 2 cut(s) 622, 734
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 516
Csp6I GTAC 1 cut(s) 828
CviAII CATG 4 cut(s) 164, 295, 965, 1064
CviQI GTAC 1 cut(s) 828
DdeI CTNAG 5 cut(s) 204, 209, 429, 727, 999
DpnI GATC 7 cut(s) 162, 174, 187, 626, 810, 824, 1004
DpnII GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
Eam1104I CTCTTC 8 cut(s) 125, 323, 380, 458, 699, 915, 927, 981
EarI CTCTTC 8 cut(s) 125, 323, 380, 458, 699, 915, 927, 981
Eco130I CCWWGG 1 cut(s) 1068
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 896, 1077
EcoT14I CCWWGG 1 cut(s) 1068
EcoT22I ATGCAT 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 1068
FaeI CATG 4 cut(s) 167, 298, 968, 1067
FaqI GGGAC 5 cut(s) 59, 299, 314, 510, 850
FatI CATG 4 cut(s) 163, 294, 964, 1063
FbaI TGATCA 1 cut(s) 172
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 3 cut(s) 611, 675, 815
FokI GGATG 3 cut(s) 122, 560, 1046
Fsp4HI GCNGC 3 cut(s) 611, 675, 815
GluI GCNGC 3 cut(s) 611, 675, 815
HaeIII GGCC 1 cut(s) 1026
Hin1II CATG 4 cut(s) 167, 298, 968, 1067
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 5 cut(s) 731, 755, 976, 989, 1017
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 7 cut(s) 90, 177, 432, 730, 736, 754, 981
Hpy188III TCNNGA 2 cut(s) 295, 882
Hpy8I GTNNAC 1 cut(s) 585
HpyAV CCTTC 1 cut(s) 391
HpyCH4III ACNGT 3 cut(s) 26, 70, 589
HpyCH4V TGCA 6 cut(s) 273, 613, 652, 848, 902, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 616, 671
HpyF3I CTNAG 5 cut(s) 204, 209, 429, 727, 999
Hsp92II CATG 4 cut(s) 167, 298, 968, 1067
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 3 cut(s) 788, 887, 1102
Lsp1109I GCAGC 3 cut(s) 597, 686, 826
LweI GCATC 4 cut(s) 374, 582, 661, 1024
MalI GATC 7 cut(s) 162, 174, 187, 626, 810, 824, 1004
MboI GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
MhlI GDGCHC 1 cut(s) 872
MluCI AATT 6 cut(s) 9, 480, 564, 639, 863, 1054
MlyI GAGTC 2 cut(s) 749, 998
MmeI TCCRAC 2 cut(s) 652, 1101
Mph1103I ATGCAT 1 cut(s) 654
MroXI GAANNNNTTC 1 cut(s) 909
MseI TTAA 1 cut(s) 1041
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 748
MwoI GCNNNNNNNGC 3 cut(s) 258, 616, 671
NdeII GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
NlaIII CATG 4 cut(s) 167, 298, 968, 1067
NlaIV GGNNCC 2 cut(s) 426, 517
NsiI ATGCAT 1 cut(s) 654
PagI TCATGA 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 915
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 3 cut(s) 731, 976, 1017
PflMI CCANNNNNTGG 1 cut(s) 1069
PkrI GCNGC 3 cut(s) 612, 676, 816
PleI GAGTC 2 cut(s) 749, 997
PpsI GAGTC 2 cut(s) 749, 997
PspN4I GGNNCC 2 cut(s) 426, 517
PspPI GGNCC 1 cut(s) 516
PstNI CAGNNNCTG 2 cut(s) 622, 734
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 829
RsaNI GTAC 1 cut(s) 828
RseI CAYNNNNRTG 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 1 cut(s) 1041
SatI GCNGC 3 cut(s) 611, 675, 815
Sau3AI GATC 7 cut(s) 160, 172, 185, 624, 808, 822, 1002
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 2 cut(s) 749, 998
SduI GDGCHC 1 cut(s) 872
SfaNI GCATC 4 cut(s) 374, 582, 661, 1024
SfcI CTRYAG 2 cut(s) 49, 585
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 3 cut(s) 253, 380, 856
SmoI CTYRAG 3 cut(s) 253, 380, 856
Sse9I AATT 6 cut(s) 9, 480, 564, 639, 863, 1054
SsiI CCGC 1 cut(s) 548
StyI CCWWGG 1 cut(s) 1068
TaaI ACNGT 3 cut(s) 26, 70, 589
TasI AATT 6 cut(s) 9, 480, 564, 639, 863, 1054
TfiI GAWTC 3 cut(s) 731, 976, 1017
Tru1I TTAA 1 cut(s) 1041
Tru9I TTAA 1 cut(s) 1041
TscAI CASTG 6 cut(s) 31, 75, 275, 594, 838, 877
TseI GCWGC 3 cut(s) 610, 674, 814
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 6 cut(s) 31, 75, 275, 594, 838, 877
Van91I CCANNNNNTGG 1 cut(s) 1069
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XmiI GTMKAC 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 909
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.