FvH4_3g11900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007324
Physical Location & Seq
Forward (+)
7034097 .. 7036534
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11900.t2

Sequence Viewer

Length: 1125 bp
ATGGCTGAAATTCAGGGAGGGAATAGTGGCAGTTTTGTAATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGGTTCTGATAGAGGCAAAGAAGATGGATGAGGAGAGAAGAGTAATGAAGAGAAGTGGTAGTTCCAGTAGGGATCATGGTGCTGATGAGACCCCAAGATCAATAATCAAACCAGCTGAGCTGAGATGGAAATGGGTGGAAGACTATTGCTGGAAGAAAGGGTGCTTGAGAAGCCAAAACCAATGCAATGACAAGTGGGACAATCTCATGAGGGACTACAAGAAAGTGAGGGAGTATGAGAGGAGAAGTAGTGTAGTGGGGGGTGAGAATAAGGAGTTGCCATCTTACTGGAAGCTTGAGAAGAGTGAAAGGAAAGAGAGGAACTTGCCTACCAATATGGTGCCTCAGATTTATGACGCTTTGGTTGAGGTGGTGGAGAAGAGAGAGATGGGTAGAATTGTGGTGGGTGGTAATGGTGGTGGTGGTGGTGCTTCTATTTCTGGGTCCATTAGTCCTAACCCCAACATTGGATATGTGGTGGAGAGGCCCATGATTAGTGGTGTTCATCACTCTACAGTGCTCTCTCCTCCTGTGATGCAACAGCAGCTGATCCAAGCTCAACCAATTGCAGCAGTGCATCTTTTACCAGCACCATTGGCAGCTCAACCACCACCTCCGCTTCCATATTCTCAACCTATTCCCCCAACATGTGAAGGCTCAGATACTGATACAAGTGAGCATTCAGACTCACCAGCCAAAAGGAGGAGGAGAGGAGGAGGAAGAGCAAGTGGTGGAGGTGGAGATCAGCAGCAGGGGATCAGTACCAGTGGTACTGTGAGTGCAGGCACCTCAAGTGAAGTGGGCACTGCTATTTCCAGAGGAGCTTCCATAATTGCAGAAGCTCTTCAGGGCTGTGAGGAGAGAGAAGAAAGGAGGCACAGAGAGATTTTGAGTATGCATGAGAGGAGGATTCAGATTGAGGAGACTAAAACTGAGGTCAACAGGCAAGGCATTAGTGGCCTTGTTGATGCCATTAACAAGCTTGCTAATTCCATCCATGCCTTGGCTTCCAACAACCAAAGCCAATCTTCAGCTCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

375

Amino Acids

41.05

Weight (kDa)

8.86

Isoelectric Point (pI)

66.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 127 4.1e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 421, 866
AccB7I CCANNNNNTGG 1 cut(s) 1084
AciI CCGC 1 cut(s) 698
AclWI GGATC 3 cut(s) 162, 625, 845
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 911, 1095
AfaI GTAC 2 cut(s) 844, 853
AfiI CCNNNNNNNGG 3 cut(s) 548, 783, 1084
AflIII ACRYGT 1 cut(s) 728
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 3 cut(s) 71, 164, 998
AlwI GGATC 3 cut(s) 162, 625, 845
AlwNI CAGNNNCTG 2 cut(s) 628, 746
AoxI GGCC 2 cut(s) 566, 1039
ApeKI GCWGC 4 cut(s) 625, 650, 680, 829
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 924
AspS9I GGNCC 2 cut(s) 525, 567
AsuHPI GGTGA 2 cut(s) 356, 762
AvaII GGWCC 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 887
BanI GGYRCC 2 cut(s) 421, 866
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 4 cut(s) 637, 662, 692, 841
BccI CCATC 5 cut(s) 100, 201, 370, 463, 1082
BcoDI GTCTC 3 cut(s) 71, 164, 998
BfmI CTRYAG 2 cut(s) 49, 594
BisI GCNGC 4 cut(s) 626, 651, 681, 830
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 4 cut(s) 627, 652, 682, 831
Bme18I GGWCC 1 cut(s) 525
BmgT120I GGNCC 2 cut(s) 525, 567
BmiI GGNNCC 3 cut(s) 423, 526, 868
BmsI GCATC 3 cut(s) 606, 667, 1039
BpiI GAAGAC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 3 cut(s) 268, 398, 856
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 1083
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 548, 783, 1084
Bse1I ACTGG 4 cut(s) 68, 147, 374, 846
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 1083
BseGI GGATG 2 cut(s) 115, 1074
BseLI CCNNNNNNNGG 3 cut(s) 548, 783, 1084
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 5 cut(s) 189, 194, 440, 753, 1005
BseNI ACTGG 4 cut(s) 68, 147, 374, 846
BseSI GKGCMC 1 cut(s) 887
BseXI GCAGC 4 cut(s) 637, 662, 692, 841
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 2 cut(s) 568, 1041
BshNI GGYRCC 2 cut(s) 421, 866
BsiHKAI GWGCWC 1 cut(s) 603
BslFI GGGAC 3 cut(s) 59, 293, 308
BslI CCNNNNNNNGG 3 cut(s) 548, 783, 1084
BsmAI GTCTC 3 cut(s) 71, 164, 998
BsmFI GGGAC 3 cut(s) 59, 293, 308
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 2 cut(s) 568, 1041
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 603, 887
Bsp143I GATC 5 cut(s) 154, 179, 630, 823, 837
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 698
BspANI GGCC 2 cut(s) 568, 1041
BspCNI CTCAG 5 cut(s) 190, 195, 439, 752, 1006
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 423, 526, 868
BspPI GGATC 3 cut(s) 162, 625, 845
BspQI GCTCTTC 2 cut(s) 796, 930
BspT107I GGYRCC 2 cut(s) 421, 866
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 4 cut(s) 68, 147, 374, 846
BssECI CCNNGG 1 cut(s) 1083
BssMI GATC 5 cut(s) 154, 179, 630, 823, 837
BssT1I CCWWGG 1 cut(s) 1083
Bst4CI ACNGT 3 cut(s) 70, 598, 856
Bst6I CTCTTC 6 cut(s) 115, 125, 377, 455, 796, 930
BstC8I GCNNGC 2 cut(s) 865, 1065
BstDEI CTNAG 5 cut(s) 198, 203, 426, 739, 1014
BstF5I GGATG 2 cut(s) 115, 1074
BstKTI GATC 5 cut(s) 157, 182, 633, 826, 840
BstMAI GTCTC 3 cut(s) 71, 164, 998
BstMBI GATC 5 cut(s) 154, 179, 630, 823, 837
BstMWI GCNNNNNNNGC 4 cut(s) 252, 625, 677, 1038
BstNSI RCATGY 1 cut(s) 732
BstSFI CTRYAG 2 cut(s) 49, 594
BstSLI GKGCMC 1 cut(s) 887
BstV1I GCAGC 4 cut(s) 637, 662, 692, 841
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 568, 1041
BtsCI GGATG 2 cut(s) 115, 1074
BtsI GCAGTG 2 cut(s) 660, 885
BtsIMutI CAGTG 5 cut(s) 75, 603, 660, 853, 885
Cac8I GCNNGC 2 cut(s) 865, 1065
CaiI CAGNNNCTG 2 cut(s) 628, 746
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 525, 567
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 843, 852
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviAII CATG 6 cut(s) 158, 289, 571, 729, 980, 1079
CviQI GTAC 2 cut(s) 843, 852
DdeI CTNAG 5 cut(s) 198, 203, 426, 739, 1014
DpnI GATC 5 cut(s) 156, 181, 632, 825, 839
DpnII GATC 5 cut(s) 154, 179, 630, 823, 837
Eam1104I CTCTTC 6 cut(s) 115, 125, 377, 455, 796, 930
EarI CTCTTC 6 cut(s) 115, 125, 377, 455, 796, 930
Eco130I CCWWGG 1 cut(s) 1083
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 2 cut(s) 911, 1095
EcoT14I CCWWGG 1 cut(s) 1083
EcoT22I ATGCAT 1 cut(s) 981
ErhI CCWWGG 1 cut(s) 1083
FaeI CATG 6 cut(s) 161, 292, 574, 732, 983, 1082
FalI AAGNNNNNCTT 2 cut(s) 1093, 1125
FaqI GGGAC 3 cut(s) 59, 293, 308
FatI CATG 6 cut(s) 157, 288, 570, 728, 979, 1078
Fnu4HI GCNGC 4 cut(s) 626, 651, 681, 830
FokI GGATG 2 cut(s) 122, 1061
Fsp4HI GCNGC 4 cut(s) 626, 651, 681, 830
GluI GCNGC 4 cut(s) 626, 651, 681, 830
HaeIII GGCC 2 cut(s) 568, 1041
HgaI GACGC 1 cut(s) 446
Hin1II CATG 6 cut(s) 161, 292, 574, 732, 983, 1082
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HindIII AAGCTT 2 cut(s) 374, 1061
HinfI GANTC 2 cut(s) 767, 991
HphI GGTGA 2 cut(s) 356, 762
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188I TCNGA 5 cut(s) 90, 429, 742, 766, 996
Hpy188III TCNNGA 2 cut(s) 289, 897
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 1 cut(s) 728
HpyCH4III ACNGT 3 cut(s) 70, 598, 856
HpyCH4V TGCA 7 cut(s) 267, 619, 650, 658, 863, 917, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 625, 677, 1038
HpyF3I CTNAG 5 cut(s) 198, 203, 426, 739, 1014
Hsp92II CATG 6 cut(s) 161, 292, 574, 732, 983, 1082
Kzo9I GATC 5 cut(s) 154, 179, 630, 823, 837
LguI GCTCTTC 2 cut(s) 796, 930
LmnI GCTCC 2 cut(s) 902, 1120
Lsp1109I GCAGC 4 cut(s) 637, 662, 692, 841
LweI GCATC 3 cut(s) 606, 667, 1039
MalI GATC 5 cut(s) 156, 181, 632, 825, 839
MboI GATC 5 cut(s) 154, 179, 630, 823, 837
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 603, 887
MluCI AATT 5 cut(s) 9, 477, 645, 912, 1069
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 1 cut(s) 1116
Mph1103I ATGCAT 1 cut(s) 981
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 1 cut(s) 1056
MspA1I CMGCKG 2 cut(s) 197, 628
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 760
MwoI GCNNNNNNNGC 4 cut(s) 252, 625, 677, 1038
NdeII GATC 5 cut(s) 154, 179, 630, 823, 837
NlaIII CATG 6 cut(s) 161, 292, 574, 732, 983, 1082
NlaIV GGNNCC 3 cut(s) 423, 526, 868
NsiI ATGCAT 1 cut(s) 981
NspI RCATGY 1 cut(s) 732
PagI TCATGA 1 cut(s) 288
PciI ACATGT 1 cut(s) 728
PciSI GCTCTTC 2 cut(s) 796, 930
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 1 cut(s) 991
PflMI CCANNNNNTGG 1 cut(s) 1084
PkrI GCNGC 4 cut(s) 627, 652, 682, 831
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
PscI ACATGT 1 cut(s) 728
PspN4I GGNNCC 3 cut(s) 423, 526, 868
PspPI GGNCC 2 cut(s) 525, 567
PstNI CAGNNNCTG 2 cut(s) 628, 746
PvuII CAGCTG 2 cut(s) 197, 628
RsaI GTAC 2 cut(s) 844, 853
RsaNI GTAC 2 cut(s) 843, 852
SapI GCTCTTC 2 cut(s) 796, 930
SaqAI TTAA 1 cut(s) 1056
SatI GCNGC 4 cut(s) 626, 651, 681, 830
Sau3AI GATC 5 cut(s) 154, 179, 630, 823, 837
Sau96I GGNCC 2 cut(s) 525, 567
SchI GAGTC 1 cut(s) 761
SduI GDGCHC 2 cut(s) 603, 887
SfaNI GCATC 3 cut(s) 606, 667, 1039
SfcI CTRYAG 2 cut(s) 49, 594
SinI GGWCC 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 247, 377, 871
SmoI CTYRAG 3 cut(s) 247, 377, 871
Sse9I AATT 5 cut(s) 9, 477, 645, 912, 1069
SsiI CCGC 1 cut(s) 698
StyI CCWWGG 1 cut(s) 1083
TaaI ACNGT 3 cut(s) 70, 598, 856
TasI AATT 5 cut(s) 9, 477, 645, 912, 1069
TfiI GAWTC 1 cut(s) 991
Tru1I TTAA 1 cut(s) 1056
Tru9I TTAA 1 cut(s) 1056
TscAI CASTG 5 cut(s) 75, 603, 660, 853, 892
TseI GCWGC 4 cut(s) 625, 650, 680, 829
TspDTI ATGAA 2 cut(s) 143, 575
TspRI CASTG 5 cut(s) 75, 603, 660, 853, 892
Van91I CCANNNNNTGG 1 cut(s) 1084
VpaK11BI GGWCC 1 cut(s) 525
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 732
XcmI CCANNNNNNNNNTGG 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.