RchiOBHm_Chr5g0019411
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007324
Physical Location & Seq
Forward (+)
13926549 .. 13929379
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29954

Sequence Viewer

Length: 1101 bp
ATGGCTGAAATTCAAGGAGGGAACAGTGGCAGTTTTGTAATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGGTTCTGATTGAGGCAAAGAAGATGGATGAGGAGAGAAGAATAATGAAGAGAAGTGGTAGTGGTAGTGGGGATCATGGGGCTGATCAGACCCCCAGATCAATAAGCAAACCAGCTGAGCTGAGATGGAAATGGGTGGAAGACTATTGCTGGAAGAAAGGGTGCTTGAGAAGCCAAAACCAGTGCAATGACAAGTGGGACAATCTCATGAGGGACTACAAGAAAGTGAGGGAGTATGAGAAGAGAAGTGTAGGGGTGGGAGAGAATAAGGAGTTGGCATCTTACTGGAAGCTTGAGAAGAGTGAGAGGAAGGAGAGGAACTTGCCCACAAATATGGTGCCTCAGATTTATGAGGCTTTGGTTGAGGTGGTGGAGAAGAGAGAGATGGGTAGAATTGTGGTCGGTGGTGGTGGTGCTTCTGTTTCTGGGTCCATTAGTCCCAACCCCAACATTGGATATGCGGTGGAGAGACCCATAATTAGTGGCATCCATCAGTCTACAGTGCTCTCTCCTCCTCCTGTGCTGCAACAGCACCTGATCCAACCACAACCAATTTCAGCAATGCATCTTTTACCAGCACCATTGGCAGCTCAACCACCACCTCCTCTTCCATATTCTCAACCTATTCCCCCAGTAGGCTCAGATTCTGATACAAGTGAGCATTCAGACTCAACAGCCAAGAGGAGGAGGAGAGGAGGAGGAGCAAGTGGTGGAGGTGGAGATCAGCAGCAGGGGATCAGTACCAGTGGGACTGTGAGTGCAAGCACCTCAAGTGAATTGGGCACTGCTATTTCCAGAGGAGCTTCCATGATTGCAGAAGCTCTTCAGGGCTGTGAGGAGAGTGAAGAGAGGAGGCACAGAGAGATTTTGAGTTTGCATGAGAGAAGGATTCAGATTGAAGAGTCTAAAACTGAGATCAACAGGCAAGGAATCAATGGCCTTGTTGATGCCATTAACAAACTTGCTAATTCCATCCATGCCTTGGCTTCCAACAGCAACCAATCTTCAGCTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

366

Amino Acids

40.07

Weight (kDa)

8.76

Isoelectric Point (pI)

66.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 111 4e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 1063
AccI GTMKAC 1 cut(s) 578
AciI CCGC 1 cut(s) 542
AclWI GGATC 3 cut(s) 162, 613, 824
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 890, 1071
AfaI GTAC 1 cut(s) 823
AfiI CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
AgsI TTSAA 2 cut(s) 14, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 7 cut(s) 197, 202, 373, 671, 884, 902, 1091
AluI AGCT 7 cut(s) 197, 202, 373, 671, 884, 902, 1091
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 71, 544
AlwI GGATC 3 cut(s) 162, 613, 824
AlwNI CAGNNNCTG 2 cut(s) 616, 728
AoxI GGCC 1 cut(s) 1018
ApeKI GCWGC 3 cut(s) 604, 668, 808
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 903
AspS9I GGNCC 1 cut(s) 510
AvaII GGWCC 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 866
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 591, 680, 820
BccI CCATC 5 cut(s) 100, 201, 460, 579, 1061
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 71, 544
BfmI CTRYAG 2 cut(s) 49, 579
BisI GCNGC 3 cut(s) 605, 669, 809
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 3 cut(s) 606, 670, 810
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 420, 511
BmrI ACTGGG 1 cut(s) 707
BmsI GCATC 4 cut(s) 368, 576, 655, 1018
BmuI ACTGGG 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 3 cut(s) 268, 395, 835
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
Bse1I ACTGG 5 cut(s) 68, 262, 371, 713, 825
Bse3DI GCAATG 2 cut(s) 274, 648
BseDI CCNNGG 1 cut(s) 1062
BseGI GGATG 3 cut(s) 115, 567, 1053
BseLI CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
BseMI GCAATG 2 cut(s) 274, 648
BseMII CTCAG 5 cut(s) 189, 194, 437, 735, 984
BseNI ACTGG 5 cut(s) 68, 262, 371, 713, 825
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 3 cut(s) 591, 680, 820
BshFI GGCC 1 cut(s) 1020
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 588
BslFI GGGAC 5 cut(s) 59, 293, 308, 504, 844
BslI CCNNNNNNNGG 4 cut(s) 533, 716, 765, 1063
BsmAI GTCTC 2 cut(s) 71, 544
BsmFI GGGAC 5 cut(s) 59, 293, 308, 504, 844
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 1020
Bso31I GGTCTC 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 588, 866
Bsp143I GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 5 cut(s) 190, 195, 436, 734, 985
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 420, 511
BspPI GGATC 3 cut(s) 162, 613, 824
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 274, 648
BsrI ACTGG 5 cut(s) 68, 262, 371, 713, 825
BssECI CCNNGG 1 cut(s) 1062
BssMI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
BssT1I CCWWGG 1 cut(s) 1062
Bst4CI ACNGT 4 cut(s) 26, 70, 583, 835
Bst6I CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 909, 921, 975
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 5 cut(s) 198, 203, 423, 721, 993
BstF5I GGATG 3 cut(s) 115, 567, 1053
BstKTI GATC 7 cut(s) 157, 169, 182, 621, 805, 819, 999
BstMAI GTCTC 2 cut(s) 71, 544
BstMBI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
BstMWI GCNNNNNNNGC 3 cut(s) 252, 610, 665
BstSFI CTRYAG 2 cut(s) 49, 579
BstSLI GKGCMC 1 cut(s) 866
BstV1I GCAGC 3 cut(s) 591, 680, 820
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 415
BsuRI GGCC 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 115, 567, 1053
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 6 cut(s) 31, 75, 269, 588, 832, 864
Cac8I GCNNGC 1 cut(s) 844
CaiI CAGNNNCTG 2 cut(s) 616, 728
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 822
CviAII CATG 5 cut(s) 158, 289, 889, 959, 1058
CviQI GTAC 1 cut(s) 822
DdeI CTNAG 5 cut(s) 198, 203, 423, 721, 993
DpnI GATC 7 cut(s) 156, 168, 181, 620, 804, 818, 998
DpnII GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
Eam1104I CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 909, 921, 975
EarI CTCTTC 8 cut(s) 125, 317, 374, 452, 693, 909, 921, 975
Eco130I CCWWGG 1 cut(s) 1062
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 2 cut(s) 890, 1071
EcoT14I CCWWGG 1 cut(s) 1062
EcoT22I ATGCAT 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 1062
FaeI CATG 5 cut(s) 161, 292, 892, 962, 1061
FaqI GGGAC 5 cut(s) 59, 293, 308, 504, 844
FatI CATG 5 cut(s) 157, 288, 888, 958, 1057
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 578
Fnu4HI GCNGC 3 cut(s) 605, 669, 809
FokI GGATG 3 cut(s) 122, 554, 1040
Fsp4HI GCNGC 3 cut(s) 605, 669, 809
GluI GCNGC 3 cut(s) 605, 669, 809
HaeIII GGCC 1 cut(s) 1020
Hin1II CATG 5 cut(s) 161, 292, 892, 962, 1061
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 5 cut(s) 725, 749, 970, 983, 1011
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 7 cut(s) 90, 171, 426, 724, 730, 748, 975
Hpy188III TCNNGA 2 cut(s) 289, 876
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 2 cut(s) 385, 960
HpyCH4III ACNGT 4 cut(s) 26, 70, 583, 835
HpyCH4V TGCA 6 cut(s) 267, 607, 646, 842, 896, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 610, 665
HpyF3I CTNAG 5 cut(s) 198, 203, 423, 721, 993
Hsp92II CATG 5 cut(s) 161, 292, 892, 962, 1061
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 3 cut(s) 782, 881, 1096
Lsp1109I GCAGC 3 cut(s) 591, 680, 820
LweI GCATC 4 cut(s) 368, 576, 655, 1018
MalI GATC 7 cut(s) 156, 168, 181, 620, 804, 818, 998
MboI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
MhlI GDGCHC 2 cut(s) 588, 866
MluCI AATT 6 cut(s) 9, 474, 558, 633, 857, 1048
MlyI GAGTC 2 cut(s) 743, 992
MmeI TCCRAC 2 cut(s) 646, 1095
Mph1103I ATGCAT 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 1 cut(s) 1035
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 742
MwoI GCNNNNNNNGC 3 cut(s) 252, 610, 665
NdeII GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
NlaIII CATG 5 cut(s) 161, 292, 892, 962, 1061
NlaIV GGNNCC 2 cut(s) 420, 511
NsiI ATGCAT 1 cut(s) 648
PagI TCATGA 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 909
PctI GAATGC 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 3 cut(s) 725, 970, 1011
PflMI CCANNNNNTGG 1 cut(s) 1063
PkrI GCNGC 3 cut(s) 606, 670, 810
PleI GAGTC 2 cut(s) 743, 991
PpsI GAGTC 2 cut(s) 743, 991
PspN4I GGNNCC 2 cut(s) 420, 511
PspPI GGNCC 1 cut(s) 510
PstNI CAGNNNCTG 2 cut(s) 616, 728
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 823
RsaNI GTAC 1 cut(s) 822
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 1 cut(s) 1035
SatI GCNGC 3 cut(s) 605, 669, 809
Sau3AI GATC 7 cut(s) 154, 166, 179, 618, 802, 816, 996
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 2 cut(s) 743, 992
SduI GDGCHC 2 cut(s) 588, 866
SfaNI GCATC 4 cut(s) 368, 576, 655, 1018
SfcI CTRYAG 2 cut(s) 49, 579
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 3 cut(s) 247, 374, 850
SmoI CTYRAG 3 cut(s) 247, 374, 850
Sse9I AATT 6 cut(s) 9, 474, 558, 633, 857, 1048
SsiI CCGC 1 cut(s) 542
StyI CCWWGG 1 cut(s) 1062
TaaI ACNGT 4 cut(s) 26, 70, 583, 835
TasI AATT 6 cut(s) 9, 474, 558, 633, 857, 1048
TfiI GAWTC 3 cut(s) 725, 970, 1011
Tru1I TTAA 1 cut(s) 1035
Tru9I TTAA 1 cut(s) 1035
TscAI CASTG 6 cut(s) 31, 75, 269, 588, 832, 871
TseI GCWGC 3 cut(s) 604, 668, 808
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 6 cut(s) 31, 75, 269, 588, 832, 871
Van91I CCANNNNNTGG 1 cut(s) 1063
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmiI GTMKAC 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 903
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.