Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005292.1

Orthogroup ID

OG0007324

Physical Location & Seq

Genomic Coordinates Forward (+)

226702 .. 228216

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005292.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atggctgaaattcaaggagggaacagtggcagttttgtaatgagggactacaggaaagggaactggacagtgggggagacaatggttctgattgaggcaaagaagatggatgaggagagaagaataatgaagagaagtggtagtggtagtggggatcatggggctgatcagacccccagatcaataagcaaaccagctgagctgagatggaaatgggtggaagactattgctggaagaaagggtgcttgagaagccaaaaccagtgcaatgacaagtgggacaatctcatgagggactacaagaaagtgagggagtatgagaagagaagtgtaggggtgggagagaataaggagttggcatcttactggaagcttgagaagagtgagaggaaggagaggaacttgcccacaaatatggtgcctcagatttatgagtctttggttgaggtggtggagaagagagagatgggtagaattgtagtcggtggtggtggtgcttctgtttctgggtccattagtcccaaccccaacattggatatgcggtggagagacccataattagtggcatccatcagtctacagtgctctctcctcctcctgtgctgcaacagcacctgatccaaccacaaccaatttcagcaatgcatcttttaccagcaccattggcagctcaaccaccacctcctcttccatattctcaacctattcccccaacatgtgaaggctcagattctgatacaagtgagcattcagactcaacagccaaaaggaggaggagaggaggaggagcaagtggtggaggtggagatcagcagcaggggatcagtaccagtgggactgtgagcgcaagcacctcaagtgaattgggcactgctatttccagaggagcttccataattgcagaagctcttcagggctgtgaggagagtgaagagaggaggcacagagagattttgagtttgcatgagaggaggattcagattgaagagtctaaaactgagatcaacaggcaaggaatcaatggccttgttgatgccattaacaaacttgctaattccatccatgccttggcttccaacagcaaccaatcttcagctccaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

368

Amino Acids

40.3

Weight (kDa)

8.49

Isoelectric Point (pI)

66.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31310 AT2G35640
fragaria_vesca	FvH4_3g11900 FvH4_3g11900 FvH4_3g11900 FvH4_3g11900
malus_domestica	MD05G1256800.v1.1 MD10G1237300.v1.1
prunus_persica	Prupe.4G107000_v2.0.a1
pyrus_communis	pycom05g23610
rosa_chinensis	RchiOBHm_Chr5g0019411
rosa_laevigata	RLG00000032442
rosa_multiflora	Rmu_co8327627.1_g000001 Rmu_co8471075.1_g000001 Rmu_sc0002759.1_g000041 Rmu_sc0005292.1_g000052
rosa_roxburghii	Rroxscaffold_1G00058630 Rroxscaffold_1G00074290
rosa_rugosa	Rorug05G0050800 Rorug05G0050900
rosa_samantha	Rh5AG141100 Rh5BG140100 Rh5CG151700 Rh5DG140700
rosa_wichuraiana	Rw5G012550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	1069
AccI	GTMKAC	1 cut(s)	578
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	3 cut(s)	162, 613, 830
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	2 cut(s)	896, 1077
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	3 cut(s)	533, 771, 1069
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	2 cut(s)	14, 986
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	7 cut(s)	197, 202, 373, 671, 890, 908, 1097
AluI	AGCT	7 cut(s)	197, 202, 373, 671, 890, 908, 1097
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	2 cut(s)	71, 544
AlwI	GGATC	3 cut(s)	162, 613, 830
AlwNI	CAGNNNCTG	2 cut(s)	616, 734
AoxI	GGCC	1 cut(s)	1024
ApeKI	GCWGC	3 cut(s)	604, 668, 814
ApoI	RAATTY	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	909
AspLEI	GCGC	1 cut(s)	848
AspS9I	GGNCC	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	591, 680, 826
BccI	CCATC	5 cut(s)	100, 201, 460, 579, 1067
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	71, 544
BfmI	CTRYAG	2 cut(s)	49, 579
BisI	GCNGC	3 cut(s)	605, 669, 815
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	3 cut(s)	606, 670, 816
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	420, 511
BmsI	GCATC	4 cut(s)	368, 576, 655, 1024
BpiI	GAAGAC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	3 cut(s)	268, 395, 841
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	1068
Bsc4I	CCNNNNNNNGG	3 cut(s)	533, 771, 1069
Bse1I	ACTGG	4 cut(s)	68, 262, 371, 831
Bse3DI	GCAATG	2 cut(s)	274, 648
BseDI	CCNNGG	1 cut(s)	1068
BseGI	GGATG	3 cut(s)	115, 567, 1059
BseLI	CCNNNNNNNGG	3 cut(s)	533, 771, 1069
BseMI	GCAATG	2 cut(s)	274, 648
BseMII	CTCAG	5 cut(s)	189, 194, 437, 741, 990
BseNI	ACTGG	4 cut(s)	68, 262, 371, 831
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	3 cut(s)	591, 680, 826
BshFI	GGCC	1 cut(s)	1026
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	588
BslFI	GGGAC	5 cut(s)	59, 293, 308, 504, 850
BslI	CCNNNNNNNGG	3 cut(s)	533, 771, 1069
BsmAI	GTCTC	2 cut(s)	71, 544
BsmFI	GGGAC	5 cut(s)	59, 293, 308, 504, 850
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	1 cut(s)	1026
Bso31I	GGTCTC	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	588, 872
Bsp143I	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	1 cut(s)	1026
BspCNI	CTCAG	5 cut(s)	190, 195, 436, 740, 991
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	420, 511
BspPI	GGATC	3 cut(s)	162, 613, 830
BspQI	GCTCTTC	1 cut(s)	915
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	274, 648
BsrI	ACTGG	4 cut(s)	68, 262, 371, 831
BssECI	CCNNGG	1 cut(s)	1068
BssMI	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
BssT1I	CCWWGG	1 cut(s)	1068
Bst4CI	ACNGT	4 cut(s)	26, 70, 583, 841
Bst6I	CTCTTC	8 cut(s)	125, 317, 374, 452, 693, 915, 927, 981
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	5 cut(s)	198, 203, 423, 727, 999
BstF5I	GGATG	3 cut(s)	115, 567, 1059
BstHHI	GCGC	1 cut(s)	848
BstKTI	GATC	7 cut(s)	157, 169, 182, 621, 811, 825, 1005
BstMAI	GTCTC	2 cut(s)	71, 544
BstMBI	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 610, 665
BstNSI	RCATGY	1 cut(s)	720
BstSFI	CTRYAG	2 cut(s)	49, 579
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	591, 680, 826
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	1026
BtsCI	GGATG	3 cut(s)	115, 567, 1059
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	6 cut(s)	31, 75, 269, 588, 838, 870
Cac8I	GCNNGC	1 cut(s)	850
CaiI	CAGNNNCTG	2 cut(s)	616, 734
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	848
Cfr13I	GGNCC	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	828
CviAII	CATG	5 cut(s)	158, 289, 717, 965, 1064
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	5 cut(s)	198, 203, 423, 727, 999
DpnI	GATC	7 cut(s)	156, 168, 181, 620, 810, 824, 1004
DpnII	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
Eam1104I	CTCTTC	8 cut(s)	125, 317, 374, 452, 693, 915, 927, 981
EarI	CTCTTC	8 cut(s)	125, 317, 374, 452, 693, 915, 927, 981
Eco130I	CCWWGG	1 cut(s)	1068
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	896, 1077
EcoT14I	CCWWGG	1 cut(s)	1068
EcoT22I	ATGCAT	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	1068
FaeI	CATG	5 cut(s)	161, 292, 720, 968, 1067
FaqI	GGGAC	5 cut(s)	59, 293, 308, 504, 850
FatI	CATG	5 cut(s)	157, 288, 716, 964, 1063
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	3 cut(s)	605, 669, 815
FokI	GGATG	3 cut(s)	122, 554, 1046
Fsp4HI	GCNGC	3 cut(s)	605, 669, 815
GlaI	GCGC	1 cut(s)	847
GluI	GCNGC	3 cut(s)	605, 669, 815
HaeIII	GGCC	1 cut(s)	1026
HhaI	GCGC	1 cut(s)	848
Hin1II	CATG	5 cut(s)	161, 292, 720, 968, 1067
Hin6I	GCGC	1 cut(s)	846
HinP1I	GCGC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	6 cut(s)	434, 731, 755, 976, 989, 1017
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	7 cut(s)	90, 171, 426, 730, 736, 754, 981
Hpy188III	TCNNGA	2 cut(s)	289, 882
Hpy8I	GTNNAC	1 cut(s)	579
HpyAV	CCTTC	2 cut(s)	385, 716
HpyCH4III	ACNGT	4 cut(s)	26, 70, 583, 841
HpyCH4V	TGCA	5 cut(s)	267, 607, 646, 902, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 610, 665
HpyF3I	CTNAG	5 cut(s)	198, 203, 423, 727, 999
Hsp92II	CATG	5 cut(s)	161, 292, 720, 968, 1067
HspAI	GCGC	1 cut(s)	846
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	3 cut(s)	788, 887, 1102
Lsp1109I	GCAGC	3 cut(s)	591, 680, 826
LweI	GCATC	4 cut(s)	368, 576, 655, 1024
MalI	GATC	7 cut(s)	156, 168, 181, 620, 810, 824, 1004
MboI	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
MhlI	GDGCHC	2 cut(s)	588, 872
MluCI	AATT	7 cut(s)	9, 474, 558, 633, 863, 897, 1054
MlyI	GAGTC	3 cut(s)	443, 749, 998
MmeI	TCCRAC	2 cut(s)	646, 1101
Mph1103I	ATGCAT	1 cut(s)	648
MroXI	GAANNNNTTC	1 cut(s)	909
MseI	TTAA	1 cut(s)	1041
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	748
MwoI	GCNNNNNNNGC	3 cut(s)	252, 610, 665
NdeII	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
NlaIII	CATG	5 cut(s)	161, 292, 720, 968, 1067
NlaIV	GGNNCC	2 cut(s)	420, 511
NsiI	ATGCAT	1 cut(s)	648
NspI	RCATGY	1 cut(s)	720
PagI	TCATGA	1 cut(s)	288
PciI	ACATGT	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	915
PctI	GAATGC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	909
PfeI	GAWTC	3 cut(s)	731, 976, 1017
PflMI	CCANNNNNTGG	1 cut(s)	1069
PkrI	GCNGC	3 cut(s)	606, 670, 816
PleI	GAGTC	3 cut(s)	442, 749, 997
PpsI	GAGTC	3 cut(s)	442, 749, 997
PscI	ACATGT	1 cut(s)	716
PspN4I	GGNNCC	2 cut(s)	420, 511
PspPI	GGNCC	1 cut(s)	510
PstNI	CAGNNNCTG	2 cut(s)	616, 734
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
RseI	CAYNNNNRTG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	1041
SatI	GCNGC	3 cut(s)	605, 669, 815
Sau3AI	GATC	7 cut(s)	154, 166, 179, 618, 808, 822, 1002
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	3 cut(s)	443, 749, 998
SduI	GDGCHC	2 cut(s)	588, 872
SfaNI	GCATC	4 cut(s)	368, 576, 655, 1024
SfcI	CTRYAG	2 cut(s)	49, 579
SinI	GGWCC	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	3 cut(s)	247, 374, 856
SmoI	CTYRAG	3 cut(s)	247, 374, 856
Sse9I	AATT	7 cut(s)	9, 474, 558, 633, 863, 897, 1054
SsiI	CCGC	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	4 cut(s)	26, 70, 583, 841
TasI	AATT	7 cut(s)	9, 474, 558, 633, 863, 897, 1054
TfiI	GAWTC	3 cut(s)	731, 976, 1017
Tru1I	TTAA	1 cut(s)	1041
Tru9I	TTAA	1 cut(s)	1041
TscAI	CASTG	6 cut(s)	31, 75, 269, 588, 838, 877
TseI	GCWGC	3 cut(s)	604, 668, 814
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	6 cut(s)	31, 75, 269, 588, 838, 877
Van91I	CCANNNNNTGG	1 cut(s)	1069
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1066
XmiI	GTMKAC	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	909
Zsp2I	ATGCAT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.