MD10G1237300.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0007324
Physical Location & Seq
Reverse (-)
33349074 .. 33351420
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1237300.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGCTGGACAAGGAGGAAATGGTACTAGCAGTGTGATCATGAGGGACTACAGGAAAGGGAACTGGACAGTGGGGGAGACAATGATTCTGATAGAGGCAAAGAAGATGGATGATGAGAGAAGAATGAAGAGAAGTGGGGGTGGGGAAGGGGGTAGTAGTAGTAGTGGAGGAACTGATCAGACAACAAGATCAATGGGGAAACCAGCTGAGCTCAGGTGGAAGTGGGTGGAGGACTACTGTTGGAAAAAAGGTTGTTTGAGAAGCCAAAATCAGTGCAATGACAAGTGGGACAATCTCATGAGGGATTACAAGAAAGTGAGAGAATATGAGAGGAAGATTACTAATGTGGGAGAAGGGAAAGGAGAAGAAGGTAGAGCATCTTATTGGAAGCTTGAGAAGAATGAGAGGAAGGAGAGGAACTTGCCTACAAATATGGTGCTTCAGATTTATGAGGCTTTGGTGGATGTGGTGGAGAGGAGAGAAGCTGCTGGTGGTGGTGGTTATCAGATTAGAGGTCATCAGGTGGTGGGAGGAGCTTCTGTTTCTGGTTCAAATGTTGGGATTAGTCCAAATATTGGGTATGGTTTGGAGAGGCCTATAATTAGTACCACTGGTGTTCATCAGCAGCCTTCTTCTTCACTGCCTCCTCCTCCTCCTCCAGTTCTGCAACATCATCATCATCAAATCTCAGTTCCAACAATTGCAGCATTGCCACTTCTTCCACCAGCTCCACTGGCAGCCCAACCACCACCTGCTCTCCAATACGCACAGGTGATGCCCACAGTAGATTCTGATACAAGTGAGCATTCAGACTCACCAGCTAAAAGGAGGAGGAGGGCAAGTGGAAGAGGTGGTGGCGGTGGCGGTGGAGATCAAGGAGGAACCAGTGGAACTGTGAGCGCAAGCACCTCAAGTGAAGTGGGAACTGCCATCGCTGGAGGTGCTTCCGTGATTGCAGAAGCACTTCAGGGCTGTGAGGAGAGAGAAGAGAGGAGGCACAGAGAGATGTTGAGTTTGCATGAGAGAAGGCTACAGATCGAGGAAACTAAGACTGAGATCAACAGGCAAGGCATTAATGGCCTCATTGATGCCATTAACAAGCTTGCAAATTCCATCCATGACTTGGCTTCCAACAAGAACCAACAGCCACCTCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

387

Amino Acids

41.82

Weight (kDa)

8.91

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 21 - 112 2e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 760
Acc36I ACCTGC 1 cut(s) 760
AccB7I CCANNNNNTGG 2 cut(s) 575, 1123
AciI CCGC 2 cut(s) 858, 864
AcsI RAATTY 1 cut(s) 1108
AcuI CTGAAG 2 cut(s) 425, 950
AfaI GTAC 2 cut(s) 25, 607
AfiI CCNNNNNNNGG 2 cut(s) 575, 1123
AgsI TTSAA 1 cut(s) 552
AluBI AGCT 8 cut(s) 206, 211, 391, 485, 536, 728, 821, 1102
AluI AGCT 8 cut(s) 206, 211, 391, 485, 536, 728, 821, 1102
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 2 cut(s) 593, 1078
ApeKI GCWGC 4 cut(s) 485, 625, 704, 737
ApoI RAATTY 1 cut(s) 1108
AseI ATTAAT 1 cut(s) 1074
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 1 cut(s) 902
AsuHPI GGTGA 2 cut(s) 784, 807
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 472, 637, 716, 749
BccI CCATC 3 cut(s) 100, 938, 1121
BclI TGATCA 2 cut(s) 36, 175
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 2 cut(s) 49, 1031
BfuAI ACCTGC 1 cut(s) 760
BisI GCNGC 4 cut(s) 486, 626, 705, 738
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 4 cut(s) 487, 627, 706, 739
BmiI GGNNCC 1 cut(s) 883
BmsI GCATC 3 cut(s) 386, 765, 1078
BpmI CTGGAG 2 cut(s) 642, 957
Bpu10I CCTNAGC 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 413, 895
BsaXI ACNNNNNCTCC 6 cut(s) 525, 555, 741, 771, 826, 856
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 1123
Bse1I ACTGG 5 cut(s) 68, 616, 659, 738, 885
Bse3DI GCAATG 2 cut(s) 283, 707
BseGI GGATG 3 cut(s) 115, 469, 1113
BseLI CCNNNNNNNGG 2 cut(s) 575, 1123
BseMI GCAATG 2 cut(s) 283, 707
BseMII CTCAG 4 cut(s) 198, 226, 702, 1044
BseNI ACTGG 5 cut(s) 68, 616, 659, 738, 885
BseXI GCAGC 4 cut(s) 472, 637, 716, 749
BshFI GGCC 2 cut(s) 595, 1080
BsiHKAI GWGCWC 1 cut(s) 213
BslFI GGGAC 2 cut(s) 59, 302
BslI CCNNNNNNNGG 2 cut(s) 575, 1123
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 59, 302
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 2 cut(s) 595, 1080
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
Bsp1720I GCTNAGC 1 cut(s) 207
BspACI CCGC 2 cut(s) 858, 864
BspANI GGCC 2 cut(s) 595, 1080
BspCNI CTCAG 4 cut(s) 199, 225, 701, 1045
BspHI TCATGA 2 cut(s) 39, 297
BspLI GGNNCC 1 cut(s) 883
BspMI ACCTGC 1 cut(s) 760
BsrDI GCAATG 2 cut(s) 283, 707
BsrI ACTGG 5 cut(s) 68, 616, 659, 738, 885
BssMI GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
Bst4CI ACNGT 4 cut(s) 70, 239, 784, 895
Bst6I CTCTTC 3 cut(s) 122, 841, 981
BstC8I GCNNGC 2 cut(s) 904, 1104
BstDEI CTNAG 5 cut(s) 207, 212, 688, 1047, 1053
BstF5I GGATG 3 cut(s) 115, 469, 1113
BstHHI GCGC 1 cut(s) 902
BstKTI GATC 6 cut(s) 39, 178, 191, 874, 1038, 1059
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
BstMWI GCNNNNNNNGC 3 cut(s) 734, 941, 1077
BstSFI CTRYAG 2 cut(s) 49, 1031
BstV1I GCAGC 4 cut(s) 472, 637, 716, 749
BsuRI GGCC 2 cut(s) 595, 1080
BtgZI GCGATG 1 cut(s) 916
BtsCI GGATG 3 cut(s) 115, 469, 1113
BtsI GCAGTG 2 cut(s) 37, 638
BtsIMutI CAGTG 7 cut(s) 37, 75, 278, 609, 638, 731, 892
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 904, 1104
CciI TCATGA 2 cut(s) 39, 297
CfoI GCGC 1 cut(s) 902
Csp6I GTAC 2 cut(s) 24, 606
CspCI CAANNNNNGTGG 2 cut(s) 900, 935
CviAII CATG 4 cut(s) 40, 298, 1019, 1118
CviQI GTAC 2 cut(s) 24, 606
DdeI CTNAG 5 cut(s) 207, 212, 688, 1047, 1053
DpnI GATC 6 cut(s) 38, 177, 190, 873, 1037, 1058
DpnII GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
Eam1104I CTCTTC 3 cut(s) 122, 841, 981
EarI CTCTTC 3 cut(s) 122, 841, 981
Ecl136II GAGCTC 1 cut(s) 211
Eco147I AGGCCT 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 425, 950
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 4 cut(s) 43, 301, 1022, 1121
FaiI YATR 9 cut(s) 41, 299, 327, 434, 450, 582, 599, 1020, 1119
FaqI GGGAC 2 cut(s) 59, 302
FatI CATG 4 cut(s) 39, 297, 1018, 1117
FbaI TGATCA 2 cut(s) 36, 175
Fnu4HI GCNGC 4 cut(s) 486, 626, 705, 738
FokI GGATG 3 cut(s) 122, 476, 1100
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 4 cut(s) 486, 626, 705, 738
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 901
GluI GCNGC 4 cut(s) 486, 626, 705, 738
GsuI CTGGAG 2 cut(s) 642, 957
HaeIII GGCC 2 cut(s) 595, 1080
HhaI GCGC 1 cut(s) 902
Hin1II CATG 4 cut(s) 43, 301, 1022, 1121
Hin6I GCGC 1 cut(s) 900
HinP1I GCGC 1 cut(s) 900
HindIII AAGCTT 2 cut(s) 389, 1100
HinfI GANTC 3 cut(s) 85, 788, 812
HphI GGTGA 2 cut(s) 784, 807
Hpy188I TCNGA 6 cut(s) 90, 180, 444, 507, 793, 811
Hpy188III TCNNGA 2 cut(s) 40, 298
HpyAV CCTTC 6 cut(s) 140, 347, 362, 403, 639, 1020
HpyCH4III ACNGT 4 cut(s) 70, 239, 784, 895
HpyCH4V TGCA 6 cut(s) 276, 667, 704, 956, 1018, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 734, 941, 1077
HpyF3I CTNAG 5 cut(s) 207, 212, 688, 1047, 1053
Hsp92II CATG 4 cut(s) 43, 301, 1022, 1121
HspAI GCGC 1 cut(s) 900
Ksp22I TGATCA 2 cut(s) 36, 175
Kzo9I GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
LmnI GCTCC 2 cut(s) 533, 733
Lsp1109I GCAGC 4 cut(s) 472, 637, 716, 749
LweI GCATC 3 cut(s) 386, 765, 1078
MaeI CTAG 1 cut(s) 27
MalI GATC 6 cut(s) 38, 177, 190, 873, 1037, 1058
MboI GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 4 cut(s) 600, 699, 1108, 1156
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 3 cut(s) 221, 719, 1155
MroXI GAANNNNTTC 1 cut(s) 963
MseI TTAA 2 cut(s) 1074, 1095
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 805
MwoI GCNNNNNNNGC 3 cut(s) 734, 941, 1077
NdeII GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
NlaIII CATG 4 cut(s) 43, 301, 1022, 1121
NlaIV GGNNCC 1 cut(s) 883
PagI TCATGA 2 cut(s) 39, 297
PaqCI CACCTGC 1 cut(s) 760
PceI AGGCCT 1 cut(s) 595
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 2 cut(s) 85, 788
PflMI CCANNNNNTGG 2 cut(s) 575, 1123
PkrI GCNGC 4 cut(s) 487, 627, 706, 739
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
PshBI ATTAAT 1 cut(s) 1074
Psp124BI GAGCTC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 883
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 25, 607
RsaNI GTAC 2 cut(s) 24, 606
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 1074, 1095
SatI GCNGC 4 cut(s) 486, 626, 705, 738
Sau3AI GATC 6 cut(s) 36, 175, 188, 871, 1035, 1056
SchI GAGTC 1 cut(s) 806
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 386, 765, 1078
SfcI CTRYAG 2 cut(s) 49, 1031
SmlI CTYRAG 2 cut(s) 392, 910
SmoI CTYRAG 2 cut(s) 392, 910
Sse9I AATT 4 cut(s) 600, 699, 1108, 1156
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 2 cut(s) 858, 864
SspI AATATT 1 cut(s) 574
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 213
StuI AGGCCT 1 cut(s) 595
TaaI ACNGT 4 cut(s) 70, 239, 784, 895
TaqI TCGA 1 cut(s) 1038
TasI AATT 4 cut(s) 600, 699, 1108, 1156
TfiI GAWTC 2 cut(s) 85, 788
Tru1I TTAA 2 cut(s) 1074, 1095
Tru9I TTAA 2 cut(s) 1074, 1095
TscAI CASTG 7 cut(s) 37, 75, 278, 616, 645, 738, 892
TseI GCWGC 4 cut(s) 485, 625, 704, 737
TspDTI ATGAA 2 cut(s) 140, 608
TspGWI ACGGA 1 cut(s) 937
TspRI CASTG 7 cut(s) 37, 75, 278, 616, 645, 738, 892
Van91I CCANNNNNTGG 2 cut(s) 575, 1123
VspI ATTAAT 1 cut(s) 1074
XapI RAATTY 1 cut(s) 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.