Rorug05G0050900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007324
Physical Location & Seq
Forward (+)
4438751 .. 4442229
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0050900.1

Sequence Viewer

Length: 1443 bp
ATGAATTTTGTAGTAGTAAAAGCAACAGCTATCTTCCTAATTTTGGCTCTTACTGTGGTCGAGCCTAAGCCTGTTCCGGATGCTAGAAAGAAGCGGTCTAATACTGAGAAATTGATCAACTCATTGGCGAGTCAGGATCTTGTGACCAACCTGCCTGGCCAGCCTGCTGTAGACTTCCGGCACTATGCTGGCTATGTCACTGTCAATGAAACAAATGGCAGGGCTCTCTTTTACTGGTTTTATGAGGCTGCTACTAACCCAGATCTAAAACCTCTTGTTTTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACCCAAGAGATTGGTCCATTCATAGTGGAAACTGATGGCCATGGACTTAGATTTAATAACTACTCATGGAATAAAGAGGCCAACATGCTGTTCTTGGAATCTCCAGTTGGGGTTGGCTTTTCATACTCCAATACAACTACTGATTATGATAATCTCGGAGATGCCTTTACAGCAAATGATGCATATGCGTTTCTGCACAAGTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGGAAAATATGTTCCGGAGCTGGCCGAGCTCATCAATGACAAGAATACAGATCCTTTCCTCCATATTGATCTCAAGGGAGTCCTGCTGGGTAATCCTGAAACCTCAGATGCTGAGGATTGGAGAGGTATAGTGGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTTATACGCGAAAACTGTGATTTTGACGGTGATACTTGGAGTAATAAGATCTGTGCTCAAGCTGTGGATGAAGTACTAAAACAATACAAGGAGATAGACATTTACAGCCTTTATACCTCAGTCTGCATCGGTGATACAGCAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCACACATCTACAATGATGCCAAGAATTATGGGTGGCTATGATCCGTGTCTGGATGATTATTCAAGAAAATTCTATAACAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTCTTCCTATATACAAGAAACTCATTGCAGCAGGAATGAGAATATGGGTGTACAGTGGAGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGGTGAGTGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCAACATTCAGAGGAGCCGGGCATGCAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGGGAATCTCTGCCTTCTGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

480

Amino Acids

53.82

Weight (kDa)

6.14

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 52 - 472 1.2e-141 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1285
Acc36I ACCTGC 2 cut(s) 159, 1285
Acc65I GGTACC 1 cut(s) 1281
AccB1I GGYRCC 1 cut(s) 1281
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 777
AccIII TCCGGA 2 cut(s) 76, 604
AciI CCGC 1 cut(s) 94
AclWI GGATC 3 cut(s) 144, 635, 983
AcoI YGGCCR 3 cut(s) 157, 364, 612
AcsI RAATTY 2 cut(s) 4, 1016
AfaI GTAC 4 cut(s) 843, 1096, 1187, 1283
AfiI CCNNNNNNNGG 2 cut(s) 43, 1294
AgsI TTSAA 5 cut(s) 915, 1011, 1125, 1313, 1375
AjnI CCWGG 2 cut(s) 154, 298
AjuI GAANNNNNNNTTGG 4 cut(s) 401, 417, 433, 449
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 5 cut(s) 29, 610, 619, 830, 1072
AluI AGCT 5 cut(s) 29, 610, 619, 830, 1072
Alw21I GWGCWC 4 cut(s) 308, 621, 826, 1246
Alw26I GTCTC 1 cut(s) 1188
AlwI GGATC 3 cut(s) 144, 635, 983
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 2 cut(s) 76, 604
AoxI GGCC 5 cut(s) 157, 364, 405, 612, 1044
ApeKI GCWGC 2 cut(s) 248, 1163
ApoI RAATTY 2 cut(s) 4, 1016
Asp718I GGTACC 1 cut(s) 1281
AspS9I GGNCC 4 cut(s) 296, 341, 1045, 1064
AsuC2I CCSGG 1 cut(s) 1354
AsuHPI GGTGA 4 cut(s) 809, 911, 1309, 1393
AvaII GGWCC 3 cut(s) 296, 341, 1064
BaeI ACNNNNGTAYC 2 cut(s) 1265, 1298
BalI TGGCCA 2 cut(s) 159, 366
BanI GGYRCC 1 cut(s) 1281
BanII GRGCYC 2 cut(s) 226, 621
BauI CACGAG 1 cut(s) 1225
Bbv12I GWGCWC 4 cut(s) 308, 621, 826, 1246
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 235, 1175
BccI CCATC 5 cut(s) 356, 553, 914, 1138, 1196
BciT130I CCWGG 2 cut(s) 156, 300
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 1 cut(s) 1354
BcoDI GTCTC 1 cut(s) 1188
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 168, 1090
BfuAI ACCTGC 2 cut(s) 159, 1285
BglII AGATCT 2 cut(s) 262, 816
BisI GCNGC 2 cut(s) 249, 1164
BlsI GCNGC 2 cut(s) 250, 1165
BmcAI AGTACT 1 cut(s) 843
Bme1390I CCNGG 3 cut(s) 156, 300, 1354
Bme18I GGWCC 3 cut(s) 296, 341, 1064
BmgT120I GGNCC 4 cut(s) 296, 341, 1045, 1064
BmiI GGNNCC 3 cut(s) 1066, 1283, 1351
BmrFI CCNGG 3 cut(s) 156, 300, 1354
BmsI GCATC 8 cut(s) 70, 478, 496, 688, 903, 918, 954, 1095
BpmI CTGGAG 2 cut(s) 414, 1102
Bpu10I CCTNAGC 2 cut(s) 66, 702
BpuEI CTTGAG 4 cut(s) 521, 647, 810, 1058
BpuMI CCSGG 1 cut(s) 1354
BsaJI CCNNGG 4 cut(s) 299, 367, 1277, 1414
BsaWI WCCGGW 2 cut(s) 76, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 1294
Bse1I ACTGG 4 cut(s) 239, 431, 1085, 1395
Bse3DI GCAATG 2 cut(s) 570, 1158
BseAI TCCGGA 2 cut(s) 76, 604
BseBI CCWGG 2 cut(s) 156, 300
BseDI CCNNGG 4 cut(s) 299, 367, 1277, 1414
BseGI GGATG 4 cut(s) 85, 841, 1006, 1207
BseLI CCNNNNNNNGG 2 cut(s) 43, 1294
BseMI GCAATG 2 cut(s) 570, 1158
BseMII CTCAG 4 cut(s) 96, 693, 708, 900
BseNI ACTGG 4 cut(s) 239, 431, 1085, 1395
BseRI GAGGAG 1 cut(s) 1362
BseXI GCAGC 2 cut(s) 235, 1175
BseYI CCCAGC 2 cut(s) 676, 1068
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 5 cut(s) 159, 366, 407, 614, 1046
BshNI GGYRCC 1 cut(s) 1281
BsiHKAI GWGCWC 4 cut(s) 308, 621, 826, 1246
BsiSI CCGG 4 cut(s) 77, 178, 605, 1353
BslFI GGGAC 2 cut(s) 1050, 1263
BslI CCNNNNNNNGG 2 cut(s) 43, 1294
BsmAI GTCTC 1 cut(s) 1188
BsmFI GGGAC 2 cut(s) 1050, 1263
BsnI GGCC 5 cut(s) 159, 366, 407, 614, 1046
Bsp1286I GDGCHC 5 cut(s) 226, 308, 621, 826, 1246
Bsp13I TCCGGA 2 cut(s) 76, 604
Bsp1407I TGTACA 1 cut(s) 1185
Bsp143I GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 1 cut(s) 94
BspANI GGCC 5 cut(s) 159, 366, 407, 614, 1046
BspCNI CTCAG 4 cut(s) 97, 694, 707, 899
BspEI TCCGGA 2 cut(s) 76, 604
BspFNI CGCG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 3 cut(s) 1066, 1283, 1351
BspMAI CTGCAG 1 cut(s) 1094
BspMI ACCTGC 2 cut(s) 159, 1285
BspPI GGATC 3 cut(s) 144, 635, 983
BspQI GCTCTTC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 1281
BsrDI GCAATG 2 cut(s) 570, 1158
BsrGI TGTACA 1 cut(s) 1185
BsrI ACTGG 4 cut(s) 239, 431, 1085, 1395
BssECI CCNNGG 4 cut(s) 299, 367, 1277, 1414
BssMI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
BssSI CACGAG 1 cut(s) 1225
BssT1I CCWWGG 2 cut(s) 367, 1414
Bst2BI CACGAG 1 cut(s) 1225
Bst2UI CCWGG 2 cut(s) 156, 300
Bst4CI ACNGT 6 cut(s) 55, 202, 785, 797, 1190, 1278
Bst6I CTCTTC 2 cut(s) 313, 1201
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 1185
BstC8I GCNNGC 5 cut(s) 161, 165, 190, 612, 1359
BstDEI CTNAG 6 cut(s) 66, 105, 374, 694, 702, 886
BstDSI CCRYGG 2 cut(s) 367, 1277
BstF5I GGATG 4 cut(s) 85, 841, 1006, 1207
BstFNI CGCG 1 cut(s) 777
BstKTI GATC 7 cut(s) 117, 139, 265, 643, 661, 819, 991
BstMAI GTCTC 1 cut(s) 1188
BstMBI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
BstMWI GCNNNNNNNGC 5 cut(s) 160, 497, 506, 616, 1358
BstNI CCWGG 2 cut(s) 156, 300
BstNSI RCATGY 2 cut(s) 415, 1361
BstSCI CCNGG 3 cut(s) 154, 298, 1352
BstSFI CTRYAG 2 cut(s) 168, 1090
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 2 cut(s) 235, 1175
BstX2I RGATCY 4 cut(s) 136, 262, 640, 816
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 4 cut(s) 136, 262, 640, 816
BsuRI GGCC 5 cut(s) 159, 366, 407, 614, 1046
BtgI CCRYGG 2 cut(s) 367, 1277
BtsCI GGATG 4 cut(s) 85, 841, 1006, 1207
BtsIMutI CAGTG 3 cut(s) 198, 1195, 1388
BveI ACCTGC 2 cut(s) 159, 1285
Cac8I GCNNGC 5 cut(s) 161, 165, 190, 612, 1359
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 1108
Cfr13I GGNCC 4 cut(s) 296, 341, 1045, 1064
Csp6I GTAC 4 cut(s) 842, 1095, 1186, 1282
CviAII CATG 8 cut(s) 368, 393, 412, 740, 1052, 1109, 1269, 1358
CviQI GTAC 4 cut(s) 842, 1095, 1186, 1282
DdeI CTNAG 6 cut(s) 66, 105, 374, 694, 702, 886
DpnI GATC 7 cut(s) 116, 138, 264, 642, 660, 818, 990
DpnII GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
EaeI YGGCCR 3 cut(s) 157, 364, 612
Eam1104I CTCTTC 2 cut(s) 313, 1201
EarI CTCTTC 2 cut(s) 313, 1201
Ecl136II GAGCTC 1 cut(s) 619
Eco130I CCWWGG 2 cut(s) 367, 1414
Eco24I GRGCYC 2 cut(s) 226, 621
Eco32I GATATC 1 cut(s) 750
Eco47I GGWCC 3 cut(s) 296, 341, 1064
Eco53kI GAGCTC 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 2 cut(s) 296, 1045
EcoRII CCWGG 2 cut(s) 154, 298
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 2 cut(s) 367, 1414
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 2 cut(s) 226, 621
ErhI CCWWGG 2 cut(s) 367, 1414
FaeI CATG 8 cut(s) 371, 396, 415, 743, 1055, 1112, 1272, 1361
FaqI GGGAC 2 cut(s) 1050, 1263
FatI CATG 8 cut(s) 367, 392, 411, 739, 1051, 1108, 1268, 1357
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 249, 1164
FokI GGATG 4 cut(s) 92, 848, 1013, 1214
FriOI GRGCYC 2 cut(s) 226, 621
Fsp4HI GCNGC 2 cut(s) 249, 1164
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 249, 1164
GsaI CCCAGC 2 cut(s) 680, 1072
GsuI CTGGAG 2 cut(s) 414, 1102
HaeIII GGCC 5 cut(s) 159, 366, 407, 614, 1046
HapII CCGG 4 cut(s) 77, 178, 605, 1353
Hin1II CATG 8 cut(s) 371, 396, 415, 743, 1055, 1112, 1272, 1361
HinfI GANTC 6 cut(s) 130, 425, 669, 736, 1121, 1421
HpaII CCGG 4 cut(s) 77, 178, 605, 1353
HphI GGTGA 4 cut(s) 809, 911, 1309, 1393
Hpy166II GTNNAC 3 cut(s) 172, 1186, 1224
Hpy188I TCNGA 4 cut(s) 485, 697, 754, 1346
Hpy188III TCNNGA 9 cut(s) 77, 134, 605, 686, 998, 1011, 1075, 1109, 1313
Hpy8I GTNNAC 3 cut(s) 172, 1186, 1224
HpyAV CCTTC 2 cut(s) 574, 1440
HpyCH4III ACNGT 6 cut(s) 55, 202, 785, 797, 1190, 1278
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 497, 506, 616, 1358
HpyF3I CTNAG 6 cut(s) 66, 105, 374, 694, 702, 886
Hsp92II CATG 8 cut(s) 371, 396, 415, 743, 1055, 1112, 1272, 1361
Kpn2I TCCGGA 2 cut(s) 76, 604
KpnI GGTACC 1 cut(s) 1285
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 4 cut(s) 323, 607, 1083, 1349
Lsp1109I GCAGC 2 cut(s) 235, 1175
LweI GCATC 8 cut(s) 70, 478, 496, 688, 903, 918, 954, 1095
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 142, 196
MalI GATC 7 cut(s) 116, 138, 264, 642, 660, 818, 990
MboI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
MboII GAAGA 4 cut(s) 25, 300, 1130, 1218
MflI RGATCY 4 cut(s) 136, 262, 640, 816
MhlI GDGCHC 5 cut(s) 226, 308, 621, 826, 1246
MlsI TGGCCA 2 cut(s) 159, 366
MluCI AATT 5 cut(s) 4, 39, 110, 972, 1016
MluNI TGGCCA 2 cut(s) 159, 366
MlyI GAGTC 3 cut(s) 139, 678, 745
Mox20I TGGCCA 2 cut(s) 159, 366
Mph1103I ATGCAT 1 cut(s) 511
MroI TCCGGA 2 cut(s) 76, 604
MscI TGGCCA 2 cut(s) 159, 366
MseI TTAA 2 cut(s) 288, 381
Msp20I TGGCCA 2 cut(s) 159, 366
MspI CCGG 4 cut(s) 77, 178, 605, 1353
MspR9I CCNGG 3 cut(s) 156, 300, 1354
MvaI CCWGG 2 cut(s) 156, 300
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 5 cut(s) 160, 497, 506, 616, 1358
NciI CCSGG 1 cut(s) 1354
NcoI CCATGG 1 cut(s) 367
NdeI CATATG 1 cut(s) 511
NdeII GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
NlaIII CATG 8 cut(s) 371, 396, 415, 743, 1055, 1112, 1272, 1361
NlaIV GGNNCC 3 cut(s) 1066, 1283, 1351
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 142, 196
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 2 cut(s) 415, 1361
PaeI GCATGC 1 cut(s) 1361
PagI TCATGA 1 cut(s) 1108
PaqCI CACCTGC 1 cut(s) 1285
PciSI GCTCTTC 1 cut(s) 313
PfeI GAWTC 3 cut(s) 425, 1121, 1421
PkrI GCNGC 2 cut(s) 250, 1165
PleI GAGTC 3 cut(s) 138, 677, 744
PpsI GAGTC 3 cut(s) 138, 677, 744
PpuMI RGGWCCY 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 154, 298
PspFI CCCAGC 2 cut(s) 676, 1068
PspGI CCWGG 2 cut(s) 154, 298
PspN4I GGNNCC 3 cut(s) 1066, 1283, 1351
PspPI GGNCC 4 cut(s) 296, 341, 1045, 1064
PspPPI RGGWCCY 1 cut(s) 296
PstI CTGCAG 1 cut(s) 1094
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 4 cut(s) 136, 262, 640, 816
RsaI GTAC 4 cut(s) 843, 1096, 1187, 1283
RsaNI GTAC 4 cut(s) 842, 1095, 1186, 1282
SacI GAGCTC 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 288, 381
SatI GCNGC 2 cut(s) 249, 1164
Sau3AI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
Sau96I GGNCC 4 cut(s) 296, 341, 1045, 1064
ScaI AGTACT 1 cut(s) 843
SchI GAGTC 3 cut(s) 139, 678, 745
ScrFI CCNGG 3 cut(s) 156, 300, 1354
SduI GDGCHC 5 cut(s) 226, 308, 621, 826, 1246
SfaNI GCATC 8 cut(s) 70, 478, 496, 688, 903, 918, 954, 1095
SfcI CTRYAG 2 cut(s) 168, 1090
SinI GGWCC 3 cut(s) 296, 341, 1064
SmlI CTYRAG 4 cut(s) 536, 662, 825, 1073
SmoI CTYRAG 4 cut(s) 536, 662, 825, 1073
SphI GCATGC 1 cut(s) 1361
Sse9I AATT 5 cut(s) 4, 39, 110, 972, 1016
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 1104
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 154, 298, 1352
StyI CCWWGG 2 cut(s) 367, 1414
TaaI ACNGT 6 cut(s) 55, 202, 785, 797, 1190, 1278
TaqI TCGA 3 cut(s) 60, 926, 1438
TasI AATT 5 cut(s) 4, 39, 110, 972, 1016
TatI WGTACW 2 cut(s) 841, 1185
TfiI GAWTC 3 cut(s) 425, 1121, 1421
Tru1I TTAA 2 cut(s) 288, 381
Tru9I TTAA 2 cut(s) 288, 381
TscAI CASTG 3 cut(s) 205, 1195, 1395
TseFI GTSAC 2 cut(s) 142, 196
TseI GCWGC 2 cut(s) 248, 1163
Tsp45I GTSAC 2 cut(s) 142, 196
TspDTI ATGAA 7 cut(s) 17, 222, 337, 438, 852, 959, 1097
TspGWI ACGGA 2 cut(s) 981, 1214
TspRI CASTG 3 cut(s) 205, 1195, 1395
VpaK11BI GGWCC 3 cut(s) 296, 341, 1064
XapI RAATTY 2 cut(s) 4, 1016
XceI RCATGY 2 cut(s) 415, 1361
XcmI CCANNNNNNNNNTGG 1 cut(s) 1058
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.