Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Forward (+)

15253232 .. 15262210

Gene Structure 8979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGAAAGTCAAAAGGGAACAAATAGATGAGGCTATTGTGCATTCAGACAGGAAATTTGAGGACGAGTCGTGGCCATTAACTGAAGCCAATTGTGACTCGCCTGTTTTGGAGCCAAGCTCTCTTGATTACTTGCTCAGTATGCTTTCATATGGTAAATTGTCACTTTACTGTTCTAGGAGAACCAGTGGTCCAACCAGGCGATCACCAAGATGCTGGACAGAGAAAGAGGAAGATGATTGTATAATCAAGCTAGTTGAAAAGTGTGGTGCTAGAAGATGGTCGATCTGTCATTGCAAAGTTTTTACCAGGTCGTATAGGCAAGCAATGCAGAGAAAGAAACAAAGATGCATGGACAGAAGAAGACAACAGTATGGTAACAAGTGGGCAGAAATAGCAAGGTTTCTACCTGGAAGGATTGACAATGCAATTAAAAATTACTCGAATGGCGCATTCAAGAGGAAAGAAGATTCATACTCTCCTAATGGTAATGAGCGGGACATGCATCCTGATATCTGTAGATGCATCTTGTTCTACAGAGCTGATTCTTGGAAGGTTATATGGTTCAGAAGGAAAATCTGTGAAATCACAAAAATGCAGGTCTTCAAAAAGAGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

206

Amino Acids

24.63

Weight (kDa)

9.57

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	123 - 147	4.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	1 cut(s)	496
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	260, 457, 607
AjnI	CCWGG	3 cut(s)	197, 308, 409
AloI	GAACNNNNNNTCC	2 cut(s)	175, 207
AluBI	AGCT	3 cut(s)	120, 253, 542
AluI	AGCT	3 cut(s)	120, 253, 542
AoxI	GGCC	2 cut(s)	74, 615
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	191, 615
AsuHPI	GGTGA	2 cut(s)	16, 198
AvaII	GGWCC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	76
BbsI	GAAGAC	2 cut(s)	370, 595
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	3 cut(s)	199, 310, 411
BfaI	CTAG	4 cut(s)	177, 254, 273, 619
BfmI	CTRYAG	2 cut(s)	517, 535
BfuAI	ACCTGC	1 cut(s)	589
Bme1390I	CCNGG	3 cut(s)	199, 310, 411
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 615
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	199, 310, 411
BmsI	GCATC	5 cut(s)	203, 338, 512, 514, 534
BpiI	GAAGAC	2 cut(s)	370, 595
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse1I	ACTGG	1 cut(s)	186
Bse3DI	GCAATG	2 cut(s)	292, 333
BseBI	CCWGG	3 cut(s)	199, 310, 411
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	2 cut(s)	292, 333
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	76, 617
BslFI	GGGAC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	2 cut(s)	43, 452
BsnI	GGCC	2 cut(s)	76, 617
Bsp143I	GATC	2 cut(s)	203, 285
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	76, 617
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	589
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	292, 333
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	203, 285
Bst2UI	CCWGG	3 cut(s)	199, 310, 411
Bst4CI	ACNGT	2 cut(s)	173, 372
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	2 cut(s)	206, 288
BstMBI	GATC	2 cut(s)	203, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 328, 395, 502
BstNI	CCWGG	3 cut(s)	199, 310, 411
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	197, 308, 409
BstSFI	CTRYAG	2 cut(s)	517, 535
BstV2I	GAAGAC	2 cut(s)	370, 595
BstXI	CCANNNNNNTGG	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	76, 617
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	191, 615
CsiI	ACCWGGT	1 cut(s)	308
CviAII	CATG	2 cut(s)	352, 502
CviJI	RGCY	8 cut(s)	35, 76, 89, 115, 120, 253, 542, 617
CviKI_1	RGCY	8 cut(s)	35, 76, 89, 115, 120, 253, 542, 617
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	205, 287
DpnII	GATC	2 cut(s)	203, 285
EaeI	YGGCCR	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	197, 308, 409
EcoRV	GATATC	1 cut(s)	514
EcoT22I	ATGCAT	3 cut(s)	353, 507, 527
FaeI	CATG	2 cut(s)	355, 505
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	2 cut(s)	351, 501
FauI	CCCGC	1 cut(s)	489
FauNDI	CATATG	1 cut(s)	151
FokI	GGATG	1 cut(s)	492
FspBI	CTAG	4 cut(s)	177, 254, 273, 619
GlaI	GCGC	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	76, 617
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	2 cut(s)	355, 505
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	4 cut(s)	68, 98, 470, 545
HphI	GGTGA	2 cut(s)	16, 198
Hpy188I	TCNGA	2 cut(s)	49, 569
Hpy188III	TCNNGA	3 cut(s)	125, 457, 509
HpyAV	CCTTC	3 cut(s)	408, 547, 564
HpyCH4III	ACNGT	2 cut(s)	173, 372
HpyCH4V	TGCA	8 cut(s)	43, 297, 331, 351, 428, 505, 525, 598
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 328, 395, 502
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	355, 505
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	203, 285
LmnI	GCTCC	1 cut(s)	112
LweI	GCATC	5 cut(s)	203, 338, 512, 514, 534
MabI	ACCWGGT	1 cut(s)	308
MaeI	CTAG	4 cut(s)	177, 254, 273, 619
MaeIII	GTNAC	3 cut(s)	95, 162, 377
MalI	GATC	2 cut(s)	205, 287
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	2 cut(s)	203, 285
MboII	GAAGA	6 cut(s)	245, 288, 372, 375, 479, 595
MfeI	CAATTG	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	76
MluCI	AATT	5 cut(s)	56, 91, 158, 429, 436
MluNI	TGGCCA	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	77, 92
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	25, 55, 223, 453, 606
Mox20I	TGGCCA	1 cut(s)	76
Mph1103I	ATGCAT	3 cut(s)	353, 507, 527
MscI	TGGCCA	1 cut(s)	76
MseI	TTAA	2 cut(s)	80, 432
MslI	CAYNNNNRTG	2 cut(s)	211, 593
Msp20I	TGGCCA	1 cut(s)	76
MspR9I	CCNGG	3 cut(s)	199, 310, 411
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	2 cut(s)	43, 452
MvaI	CCWGG	3 cut(s)	199, 310, 411
MwoI	GCNNNNNNNGC	4 cut(s)	142, 328, 395, 502
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	2 cut(s)	203, 285
NlaIII	CATG	2 cut(s)	355, 505
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	95, 162
NsiI	ATGCAT	3 cut(s)	353, 507, 527
NspI	RCATGY	1 cut(s)	505
PctI	GAATGC	2 cut(s)	43, 452
PfeI	GAWTC	2 cut(s)	470, 545
PleI	GAGTC	2 cut(s)	76, 92
PpsI	GAGTC	2 cut(s)	76, 92
Psp6I	CCWGG	3 cut(s)	197, 308, 409
PspGI	CCWGG	3 cut(s)	197, 308, 409
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	191, 615
RseI	CAYNNNNRTG	2 cut(s)	211, 593
SaqAI	TTAA	2 cut(s)	80, 432
Sau3AI	GATC	2 cut(s)	203, 285
Sau96I	GGNCC	2 cut(s)	191, 615
SchI	GAGTC	2 cut(s)	77, 92
ScrFI	CCNGG	3 cut(s)	199, 310, 411
SetI	ASST	8 cut(s)	122, 255, 314, 404, 412, 544, 558, 603
SexAI	ACCWGGT	1 cut(s)	308
SfaNI	GCATC	5 cut(s)	203, 338, 512, 514, 534
SfcI	CTRYAG	2 cut(s)	517, 535
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	211, 593
Sse9I	AATT	5 cut(s)	56, 91, 158, 429, 436
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	4 cut(s)	177, 254, 273, 619
StyD4I	CCNGG	3 cut(s)	197, 308, 409
TaaI	ACNGT	2 cut(s)	173, 372
TaqI	TCGA	2 cut(s)	284, 443
TasI	AATT	5 cut(s)	56, 91, 158, 429, 436
TfiI	GAWTC	2 cut(s)	470, 545
Tru1I	TTAA	2 cut(s)	80, 432
Tru9I	TTAA	2 cut(s)	80, 432
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	95, 162
Tsp45I	GTSAC	2 cut(s)	95, 162
TspDTI	ATGAA	2 cut(s)	138, 462
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	505
XspI	CTAG	4 cut(s)	177, 254, 273, 619
Zsp2I	ATGCAT	3 cut(s)	353, 507, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.