Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Reverse (-)

51746466 .. 51748429

Gene Structure 1964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTGCTAGAAGATGGTCTGTCATTGAAAAGTTTTTACCAGGCGAATAGGCAGCAATGCAGAGAAAGGTGGTACAATCATTTCAGCCTGTCTATAAACAAAGATGCATGGACAGAAGAAGTGGAAATAATTCTTGCTTTCTACCACCAACAGTATGGTAACAAGTGGGCAGAAATAGCAAGGTTTCTACCTGGAAGGACTGACAATGCAATTAAAAATTACTGGAATGGCGCATTCAAGAGGAAAGAAGATTCATACTCTCCTAATGGTAATGAGTGGGACATGCATCCTGATATCTGTATTGCTGAACTAAGATCAGATTTTATTGGGGTTAAAACAGTCAGAAAGAAGTATGATAATGCTTGTTCTACAGAGCTGACTCTTGGAAGGTCATATGGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

134

Amino Acids

15.76

Weight (kDa)

6.82

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	34 - 76	8.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	44 - 87	1.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	28, 238
AjnI	CCWGG	2 cut(s)	39, 190
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	2 cut(s)	41, 192
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	41, 192
BmrFI	CCNGG	2 cut(s)	41, 192
BmsI	GCATC	2 cut(s)	94, 295
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	41, 192
BseGI	GGATG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	41, 192
Bst4CI	ACNGT	2 cut(s)	153, 340
BstDEI	CTNAG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	2 cut(s)	41, 192
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	39, 190
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	108, 283
CviJI	RGCY	2 cut(s)	87, 376
CviKI_1	RGCY	2 cut(s)	87, 376
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	39, 190
EcoRV	GATATC	1 cut(s)	295
EcoT22I	ATGCAT	2 cut(s)	109, 288
FaeI	CATG	2 cut(s)	111, 286
FaiI	YATR	9 cut(s)	95, 109, 156, 256, 284, 354, 394, 396, 403
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	107, 282
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	111, 286
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	251, 379
Hpy188I	TCNGA	2 cut(s)	319, 344
Hpy188III	TCNNGA	2 cut(s)	238, 290
HpyAV	CCTTC	2 cut(s)	189, 381
HpyCH4III	ACNGT	2 cut(s)	153, 340
HpyCH4V	TGCA	4 cut(s)	60, 107, 209, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	111, 286
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	314
LpnPI	CCDG	7 cut(s)	26, 53, 101, 177, 204, 208, 303
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	94, 295
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	3 cut(s)	23, 128, 260
MluCI	AATT	3 cut(s)	129, 210, 217
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	1 cut(s)	234
Mph1103I	ATGCAT	2 cut(s)	109, 288
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	2 cut(s)	213, 333
MspR9I	CCNGG	2 cut(s)	41, 192
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	2 cut(s)	41, 192
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	111, 286
NsiI	ATGCAT	2 cut(s)	109, 288
NspI	RCATGY	1 cut(s)	286
PctI	GAATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	2 cut(s)	39, 190
PspGI	CCWGG	2 cut(s)	39, 190
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	213, 333
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	41, 192
SetI	ASST	5 cut(s)	71, 185, 193, 378, 392
SfaNI	GCATC	2 cut(s)	94, 295
SfcI	CTRYAG	1 cut(s)	369
Sse9I	AATT	3 cut(s)	129, 210, 217
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	39, 190
TaaI	ACNGT	2 cut(s)	153, 340
TasI	AATT	3 cut(s)	129, 210, 217
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	213, 333
Tru9I	TTAA	2 cut(s)	213, 333
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	243, 390
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	2 cut(s)	109, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.