MD08G1117700.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0004605
Physical Location & Seq
Reverse (-)
10767111 .. 10770068
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1117700.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGTTTGAATACGGACCTGTCTCTCTCTCTCTGCACTGTTCTGCAGATCTCTTTTCAAATCTTCCATTTCTTCGTTTCGATCTTCAAATTTGCTCTGTTGCAATCGCTTCGTCGATTCTTCGTCTCCGTGAAATCTCTGTTCTTCGCTCTTCCAAGCTCAGTTGGGTTGCAGGTCTTGTGTTTAACAAGGTTGGTCCTACTATTGCTTTGGGTGATTATAATGCTTACGAGTCCAAATACTGGAGGGTGTCGTTGTGTAGGAATCCGGTTATGCAGCTTGACTTGAATTCTACTCCTTCAGAAGAGCTCTGTGACAGTATTCAGAATGTTCAAGTTCTTCATGGGAGGACTAGCGGGCCTATAAGGCGTTCTACGAAAGGACAGTGGACACCTGAAGAGGATGAGATCTTGCGGAGGGCAGTTGAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAATGGTCGGACTGATACGCAATGCCTACATAGATGGCAGAAAGTCTTGAATCCAAGAATGGTCAAAGGTCCATGGTCTAAAGAGGAGGATGATATTATTATTGAGTGGGTGGAAAAATATGGCCCAAAAGATTGGTGCAGTATTGCACAGCATTTACCTGGACGTATTGGTAAGCAGTGTCGGGAAAGGTGGCATAATCATCTTAATCCTGCCATAAAGAAAGACGCATGGACACAGGCCGAGGAGTTTGCTCTGATTCGTGCTCATCAAATTTACGGGAACCAATGGGCAGAGATAACGAGATTCTTGCCTGGAAGGACAGACAATGCCATAAAAAATCACTGGAACAATTCTCTGAAGAAGAAGTTGGATTCTGTGAAGATGAAGTACTATCCATACTTGAAGTTGGGGCAAGGATTTCCTCGTGAATTGGTGGAGAGTCACGCTCTCGACTTTTGTGTCCTGCCGGAGAAGAAGGATACAGAAAATGTAAAATCTTCCTCTAGTGCCAAAAAGCTTCTCAAGTCCGACATCTTAATTGTTGAAGGGGTGCAGATAAACAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0032875 GO:0042127 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04151 ko04218 ko05166 map04151 map04218 map05166
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

346

Amino Acids

39.84

Weight (kDa)

9.28

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 126 - 172 1.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 129 - 186 2.4e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 178 - 224 4.5e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 181 - 241 8.6e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 230 - 273 4.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 233 - 279 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AasI GACNNNNNNGTC 1 cut(s) 926
Acc36I ACCTGC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 3 cut(s) 354, 412, 458
AcsI RAATTY 3 cut(s) 87, 286, 738
AcuI CTGAAG 3 cut(s) 282, 414, 845
AfaI GTAC 1 cut(s) 857
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 9 cut(s) 8, 57, 86, 286, 332, 469, 517, 871, 1013
AjnI CCWGG 2 cut(s) 625, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 4 cut(s) 157, 277, 307, 985
AluI AGCT 4 cut(s) 157, 277, 307, 985
Alw21I GWGCWC 2 cut(s) 309, 733
Alw26I GTCTC 2 cut(s) 25, 128
AoxI GGCC 3 cut(s) 356, 589, 705
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 3 cut(s) 87, 286, 738
AspS9I GGNCC 5 cut(s) 14, 194, 356, 536, 590
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 3 cut(s) 14, 194, 536
BanII GRGCYC 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 839, 871
BauI CACGAG 1 cut(s) 891
Bbv12I GWGCWC 2 cut(s) 309, 733
BbvI GCAGC 1 cut(s) 286
BccI CCATC 1 cut(s) 495
BcgI CGANNNNNNTGC 6 cut(s) 90, 124, 698, 732, 757, 791
BciT130I CCWGG 2 cut(s) 627, 780
BciVI GTATCC 1 cut(s) 940
BcoDI GTCTC 2 cut(s) 25, 128
BfaI CTAG 2 cut(s) 351, 972
BfmI CTRYAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 161
BfuI GTATCC 1 cut(s) 940
BglI GCCNNNNNGGC 1 cut(s) 364
BglII AGATCT 2 cut(s) 46, 405
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 2 cut(s) 627, 780
Bme18I GGWCC 3 cut(s) 14, 194, 536
BmgT120I GGNCC 5 cut(s) 14, 194, 356, 536, 590
BmiI GGNNCC 1 cut(s) 749
BmrFI CCNGG 2 cut(s) 627, 780
BplI GAGNNNNNCTC 2 cut(s) 898, 930
BpmI CTGGAG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 974
BsaJI CCNNGG 2 cut(s) 539, 708
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 245, 815
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 627, 780
BseDI CCNNGG 2 cut(s) 539, 708
BseGI GGATG 2 cut(s) 406, 562
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 245, 815
BseRI GAGGAG 2 cut(s) 566, 725
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 2 cut(s) 17, 625
BshFI GGCC 3 cut(s) 358, 591, 707
BsiHKAI GWGCWC 2 cut(s) 309, 733
BsiSI CCGG 2 cut(s) 266, 935
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 2 cut(s) 25, 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 3 cut(s) 358, 591, 707
Bsp1286I GDGCHC 2 cut(s) 309, 733
Bsp143I GATC 3 cut(s) 46, 79, 405
Bsp19I CCATGG 1 cut(s) 539
BspACI CCGC 3 cut(s) 354, 412, 458
BspANI GGCC 3 cut(s) 358, 591, 707
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 749
BspMAI CTGCAG 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 161
BspQI GCTCTTC 2 cut(s) 154, 297
BsrDI GCAATG 1 cut(s) 494
BsrI ACTGG 2 cut(s) 245, 815
BssECI CCNNGG 2 cut(s) 539, 708
BssMI GATC 3 cut(s) 46, 79, 405
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 2 cut(s) 627, 780
Bst4CI ACNGT 3 cut(s) 38, 317, 384
Bst6I CTCTTC 3 cut(s) 154, 297, 390
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 539
BstF5I GGATG 2 cut(s) 406, 562
BstKTI GATC 3 cut(s) 49, 82, 408
BstMAI GTCTC 2 cut(s) 25, 128
BstMBI GATC 3 cut(s) 46, 79, 405
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 2 cut(s) 627, 780
BstSCI CCNGG 2 cut(s) 625, 778
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 2 cut(s) 46, 405
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 2 cut(s) 46, 405
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 358, 591, 707
BtgI CCRYGG 1 cut(s) 539
BtsCI GGATG 2 cut(s) 406, 562
BtsI GCAGTG 1 cut(s) 650
BtsIMutI CAGTG 4 cut(s) 34, 389, 650, 808
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 5 cut(s) 14, 194, 356, 536, 590
CseI GACGC 1 cut(s) 701
Csp6I GTAC 1 cut(s) 856
CviAII CATG 3 cut(s) 341, 540, 696
CviJI RGCY 8 cut(s) 157, 277, 307, 358, 591, 707, 985, 1033
CviKI_1 RGCY 8 cut(s) 157, 277, 307, 358, 591, 707, 985, 1033
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 48, 81, 407
DpnII GATC 3 cut(s) 46, 79, 405
DraI TTTAAA 1 cut(s) 433
DrdI GACNNNNNNGTC 1 cut(s) 926
DseDI GACNNNNNNGTC 1 cut(s) 926
Eam1104I CTCTTC 3 cut(s) 154, 297, 390
EarI CTCTTC 3 cut(s) 154, 297, 390
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 309
Eco47I GGWCC 3 cut(s) 14, 194, 536
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 3 cut(s) 282, 414, 845
EcoICRI GAGCTC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 625, 778
EcoT14I CCWWGG 1 cut(s) 539
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 539
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 3 cut(s) 344, 543, 699
FatI CATG 3 cut(s) 340, 539, 695
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 2 cut(s) 413, 569
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 2 cut(s) 351, 972
GluI GCNGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 3 cut(s) 358, 591, 707
HapII CCGG 2 cut(s) 266, 935
HgaI GACGC 1 cut(s) 701
Hin1II CATG 3 cut(s) 344, 543, 699
HindIII AAGCTT 1 cut(s) 983
HinfI GANTC 8 cut(s) 115, 230, 262, 517, 724, 771, 839, 907
HpaII CCGG 2 cut(s) 266, 935
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 6 cut(s) 301, 324, 477, 723, 825, 997
Hpy188III TCNNGA 4 cut(s) 514, 650, 893, 917
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 4 cut(s) 306, 777, 937, 1007
HpyCH4III ACNGT 3 cut(s) 38, 317, 384
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 8 cut(s) 34, 44, 101, 170, 274, 606, 614, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 3 cut(s) 344, 543, 699
Kzo9I GATC 3 cut(s) 46, 79, 405
LguI GCTCTTC 2 cut(s) 154, 297
Lsp1109I GCAGC 1 cut(s) 286
MaeI CTAG 2 cut(s) 351, 972
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 2 cut(s) 311, 908
MalI GATC 3 cut(s) 48, 81, 407
MboI GATC 3 cut(s) 46, 79, 405
MflI RGATCY 2 cut(s) 46, 405
MhlI GDGCHC 2 cut(s) 309, 733
MluCI AATT 7 cut(s) 87, 286, 442, 738, 817, 896, 1005
MlyI GAGTC 2 cut(s) 239, 916
MmeI TCCRAC 3 cut(s) 455, 816, 1020
MnlI CCTC 9 cut(s) 237, 339, 391, 408, 544, 547, 703, 900, 979
MseI TTAA 4 cut(s) 183, 432, 672, 1004
MspI CCGG 2 cut(s) 266, 935
MspR9I CCNGG 2 cut(s) 627, 780
MvaI CCWGG 2 cut(s) 627, 780
MwoI GCNNNNNNNGC 1 cut(s) 364
NcoI CCATGG 1 cut(s) 539
NdeII GATC 3 cut(s) 46, 79, 405
NlaIII CATG 3 cut(s) 344, 543, 699
NlaIV GGNNCC 1 cut(s) 749
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 2 cut(s) 311, 908
PciSI GCTCTTC 2 cut(s) 154, 297
PfeI GAWTC 6 cut(s) 115, 262, 517, 724, 771, 839
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 238, 915
PpsI GAGTC 2 cut(s) 238, 915
PsiI TTATAA 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 625, 778
PspGI CCWGG 2 cut(s) 625, 778
PspN4I GGNNCC 1 cut(s) 749
PspPI GGNCC 5 cut(s) 14, 194, 356, 536, 590
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 46, 405
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
SacI GAGCTC 1 cut(s) 309
SapI GCTCTTC 2 cut(s) 154, 297
SaqAI TTAA 4 cut(s) 183, 432, 672, 1004
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 3 cut(s) 46, 79, 405
Sau96I GGNCC 5 cut(s) 14, 194, 356, 536, 590
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 2 cut(s) 239, 916
ScrFI CCNGG 2 cut(s) 627, 780
SduI GDGCHC 2 cut(s) 309, 733
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 3 cut(s) 14, 194, 536
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
Sse9I AATT 7 cut(s) 87, 286, 442, 738, 817, 896, 1005
SsiI CCGC 3 cut(s) 354, 412, 458
SspMI CTAG 2 cut(s) 351, 972
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 625, 778
StyI CCWWGG 1 cut(s) 539
TaaI ACNGT 3 cut(s) 38, 317, 384
TaiI ACGT 1 cut(s) 634
TaqI TCGA 3 cut(s) 78, 113, 918
TasI AATT 7 cut(s) 87, 286, 442, 738, 817, 896, 1005
TatI WGTACW 1 cut(s) 855
TfiI GAWTC 6 cut(s) 115, 262, 517, 724, 771, 839
Tru1I TTAA 4 cut(s) 183, 432, 672, 1004
Tru9I TTAA 4 cut(s) 183, 432, 672, 1004
TscAI CASTG 4 cut(s) 41, 389, 650, 815
TseFI GTSAC 2 cut(s) 311, 908
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 2 cut(s) 311, 908
TspDTI ATGAA 2 cut(s) 329, 866
TspGWI ACGGA 2 cut(s) 27, 116
TspRI CASTG 4 cut(s) 41, 389, 650, 815
Van91I CCANNNNNTGG 1 cut(s) 240
VpaK11BI GGWCC 3 cut(s) 14, 194, 536
XapI RAATTY 3 cut(s) 87, 286, 738
XspI CTAG 2 cut(s) 351, 972
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.