Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Reverse (-)

53375427 .. 53377457

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003838

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATAAATGCTCACTTTACTATTCTAGGACAACCAGTGGTCCAACCAGGCGATCATCAAGATGCTGGACAGACAGAGGATAAACTTCTGGTAGAGCTGGTCAGAAAGTTTAACGGGAGTAATTGGAAGCAAATAGCTACGGGTATCCCTGGGCGTTCAGATGTTCAGTGCCTGCATCGCTGGCAAAAAGTTTTGAATCCTGAAATCATCAAGGGATACTGGACAAAGGAGGAAGATGATTGTATAATCAAGCTAGTTGAAAAGTATGGTGCTAGAAGATGGTCTGTCATTGAAAAGCTTTTACCAGGTCGAATAGGCAAGCAATGCAGAGAAAGGTGGTACAATCATTTAAGCCTGGCTATAAACAAAGATGCATGGACAGAAGAAGTGGAAATAATTCTTGCTTTCTACCACCAACAGTATGGTAACAAGTGGGCAGAAATAGCAAGGTTTCTACCTGGAAGGAGTGACAATGCAATTAAAAATTACTGGAATGGCGCATTCAAGAGGAAAGAAGATTCATACTCTCCTAATGGTAATGAATGGGACATGCATCCTGATATCTGTATTGCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

194

Amino Acids

22.49

Weight (kDa)

7.01

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	24 - 65	2.3e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	25 - 74	1.3e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 117	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 132	3.9e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	123 - 165	4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	126 - 176	4.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	196, 260, 293, 505
AjnI	CCWGG	5 cut(s)	46, 148, 304, 354, 457
AluBI	AGCT	4 cut(s)	97, 137, 253, 298
AluI	AGCT	4 cut(s)	97, 137, 253, 298
AlwNI	CAGNNNCTG	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	40
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	5 cut(s)	48, 150, 306, 356, 459
BciVI	GTATCC	2 cut(s)	155, 209
BfaI	CTAG	3 cut(s)	26, 254, 273
BfuI	GTATCC	2 cut(s)	155, 209
Bme1390I	CCNGG	5 cut(s)	48, 150, 306, 356, 459
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	5 cut(s)	48, 150, 306, 356, 459
BmsI	GCATC	4 cut(s)	52, 184, 361, 562
BsaJI	CCNNGG	2 cut(s)	148, 149
Bse1I	ACTGG	3 cut(s)	35, 224, 494
Bse3DI	GCAATG	1 cut(s)	329
BseBI	CCWGG	5 cut(s)	48, 150, 306, 356, 459
BseDI	CCNNGG	2 cut(s)	148, 149
BseGI	GGATG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	329
BseNI	ACTGG	3 cut(s)	35, 224, 494
BslFI	GGGAC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	52, 574
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	3 cut(s)	35, 224, 494
BssECI	CCNNGG	2 cut(s)	148, 149
BssMI	GATC	2 cut(s)	52, 574
Bst2UI	CCWGG	5 cut(s)	48, 150, 306, 356, 459
Bst4CI	ACNGT	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	173, 182, 320
BstF5I	GGATG	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	2 cut(s)	55, 577
BstMBI	GATC	2 cut(s)	52, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 181, 324, 443
BstNI	CCWGG	5 cut(s)	48, 150, 306, 356, 459
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	5 cut(s)	46, 148, 304, 354, 457
BstXI	CCANNNNNNTGG	1 cut(s)	422
BsuI	GTATCC	2 cut(s)	155, 209
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	42, 173
Cac8I	GCNNGC	3 cut(s)	173, 182, 320
CaiI	CAGNNNCTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	375, 550
CviJI	RGCY	6 cut(s)	97, 137, 253, 298, 354, 359
CviKI_1	RGCY	6 cut(s)	97, 137, 253, 298, 354, 359
CviQI	GTAC	1 cut(s)	340
DpnI	GATC	2 cut(s)	54, 576
DpnII	GATC	2 cut(s)	52, 574
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	5 cut(s)	46, 148, 304, 354, 457
EcoRV	GATATC	1 cut(s)	562
EcoT22I	ATGCAT	2 cut(s)	376, 555
FaeI	CATG	2 cut(s)	378, 553
FaiI	YATR	8 cut(s)	245, 267, 362, 376, 423, 523, 551, 580
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	2 cut(s)	374, 549
FokI	GGATG	1 cut(s)	540
FspBI	CTAG	3 cut(s)	26, 254, 273
GlaI	GCGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	2 cut(s)	378, 553
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	196, 518
Hpy188I	TCNGA	2 cut(s)	104, 160
Hpy188III	TCNNGA	4 cut(s)	59, 200, 505, 557
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	175, 327, 374, 476, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 181, 324, 443
Hsp92II	CATG	2 cut(s)	378, 553
HspAI	GCGC	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	52, 574
LweI	GCATC	4 cut(s)	52, 184, 361, 562
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	3 cut(s)	26, 254, 273
MaeIII	GTNAC	2 cut(s)	425, 467
MalI	GATC	2 cut(s)	54, 576
MboI	GATC	2 cut(s)	52, 574
MboII	GAAGA	4 cut(s)	245, 288, 395, 527
MluCI	AATT	4 cut(s)	121, 396, 477, 484
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	3 cut(s)	70, 223, 501
Mph1103I	ATGCAT	2 cut(s)	376, 555
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	3 cut(s)	111, 350, 480
MslI	CAYNNNNRTG	1 cut(s)	60
MspR9I	CCNGG	5 cut(s)	48, 150, 306, 356, 459
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	5 cut(s)	48, 150, 306, 356, 459
MwoI	GCNNNNNNNGC	4 cut(s)	177, 181, 324, 443
NdeII	GATC	2 cut(s)	52, 574
NlaIII	CATG	2 cut(s)	378, 553
NmuCI	GTSAC	1 cut(s)	467
NsiI	ATGCAT	2 cut(s)	376, 555
NspI	RCATGY	1 cut(s)	553
PasI	CCCWGGG	1 cut(s)	149
PctI	GAATGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	196, 518
Psp6I	CCWGG	5 cut(s)	46, 148, 304, 354, 457
PspGI	CCWGG	5 cut(s)	46, 148, 304, 354, 457
PspPI	GGNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	111, 350, 480
Sau3AI	GATC	2 cut(s)	52, 574
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	5 cut(s)	48, 150, 306, 356, 459
SetI	ASST	8 cut(s)	99, 139, 255, 300, 310, 338, 452, 460
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	4 cut(s)	52, 184, 361, 562
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	121, 396, 477, 484
SspMI	CTAG	3 cut(s)	26, 254, 273
StyD4I	CCNGG	5 cut(s)	46, 148, 304, 354, 457
TaaI	ACNGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	121, 396, 477, 484
TfiI	GAWTC	2 cut(s)	196, 518
Tru1I	TTAA	3 cut(s)	111, 350, 480
Tru9I	TTAA	3 cut(s)	111, 350, 480
TscAI	CASTG	2 cut(s)	42, 173
TseFI	GTSAC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	510, 555
TspRI	CASTG	2 cut(s)	42, 173
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	3 cut(s)	26, 254, 273
Zsp2I	ATGCAT	2 cut(s)	376, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.