FvH4_5g01790
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
1135857 .. 1139564
3708 bp
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UTR
Exon/CDS
Intron
FvH4_5g01790.t1

Sequence Viewer

Length: 1308 bp
ATGGAGGAGGCTGTTGTGCATTCAGACAGGACATTTGGGGTATTATCTGAAGGCAATTGTGAATCGCCTGTTTCGGAGCCAAGCCCTCGTAGTTGGAGAACCACTGGTCCAACCAGATCTTCAAGATGCTGGACAGAGAAAGAGGATAAACTTCTGGTAGACCTTGTCAGAAAGTTTAATGGGAGTAATTGGAAACAAATAGCTGCGGGTATCCCTGGACGTTCAGATGTTCAGTGCCAGCATCGCTGGCAGAAAGTTGTGAATCCTGAAATCATTAAGGGATACTGGACAGATGAGGAAGATGATTGTATAATCAAGCTAGTTGAAAAGTATGGTGCTAGATGGTCTTTCATTGCAAAGTTTTTACCCGGTCGAATAGGAAAGCAATGCAGAGAAAGGTGGTACAATCATTTAAGCCCGGCTATAAATAAAGACGCATGGACAGAAGATGAAGAGAGAATGCTTGCTTTCTACCACCAACAGTATGGTAACAAGTGGGCAGAAATTTCAAGGTTTTTACCTGGAAGGACTGACAATGCAATTAAAAATCACTGGAATGGCGCTTTCAAGAGGAGAGAAGATTCATACTCTCCTAACGGTAGTGAATGCCACATGCATACTGATAATGCTTGTTCGACAGAGTTGACTCTTGGAAGGTCATATGGTTCAGAAGGAGATTCAGTGAAAGCTCAGAAATGCAAGTCTTCCAAAAGATGGCCAAGTGGTTCAATCAATTTGCACACTACATTACAGTCTGATTGCAGCAATGTTGTTACTCCTCTTGGTGTCAAAATTAGTGGATACTGCAAACAAATTGCTGATCATACAGTCGAAGACCGCCCTTTTCCAAACTCTCCATTGGTTTTCATGGATTCATCCACTTCTACCTACTCAAACTGTACTCCTCCGAAGATTCAATACTGCTATTCTACTCCCCCCACGAATGTGCAAAATGTTTATGCTAGCAGCACTAGTCCAAAATCTAGATTGAAGAGCTTAGCAAGGACTTTCAAAAATACTCCTTCCATCATAAGAAAGAGAGCTTCCAGAACCGCAGATCATACCAACTCTTCTGGTGCCAGCTGCTCTACTGCATTCAACATCCTGAGCCTTGGTGAAGCATGTATCAATAGCACATACTCGAACTCTTCAGACTATGTCAGAGGTTTATCTTCAATGCGGCATAGACATGAAACTTCAGAAGCTCATAAATCTCTTGGGAGGTGCCTGGAACTTGAGTTTGACGACGAAAATGACTCAGGTATTGCTAACTGTGGCGAAGTGTCGTCTGCATATGTTGGTGCATAA

Protein Analysis

436

Amino Acids

48.78

Weight (kDa)

8.38

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 43 - 86 4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 44 - 91 1.1e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 93 - 138 4e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 96 - 155 3e-19 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 144 - 186 4.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 147 - 193 8.6e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1076, 1224
AccB7I CCANNNNNTGG 1 cut(s) 714
AccI GTMKAC 1 cut(s) 159
AciI CCGC 4 cut(s) 206, 838, 1053, 1180
AcoI YGGCCR 1 cut(s) 716
AcsI RAATTY 1 cut(s) 504
AcuI CTGAAG 3 cut(s) 69, 1134, 1182
AfaI GTAC 2 cut(s) 404, 901
AfiI CCNNNNNNNGG 1 cut(s) 714
AhlI ACTAGT 1 cut(s) 971
AjnI CCWGG 3 cut(s) 214, 520, 1227
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AleI CACNNNNGTG 1 cut(s) 944
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 7 cut(s) 203, 319, 689, 996, 1043, 1083, 1205
AluI AGCT 7 cut(s) 203, 319, 689, 996, 1043, 1083, 1205
AoxI GGCC 1 cut(s) 716
ApeKI GCWGC 4 cut(s) 203, 762, 966, 1083
ApoI RAATTY 1 cut(s) 504
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 2 cut(s) 369, 419
AsuHPI GGTGA 1 cut(s) 1127
AsuNHI GCTAGC 1 cut(s) 962
AvaII GGWCC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 718
BanI GGYRCC 2 cut(s) 1076, 1224
BarI GAAGNNNNNNTAC 2 cut(s) 902, 934
BbsI GAAGAC 2 cut(s) 696, 840
BbvI GCAGC 4 cut(s) 190, 774, 978, 1070
BccI CCATC 3 cut(s) 336, 708, 1034
BciT130I CCWGG 3 cut(s) 216, 522, 1229
BciVI GTATCC 3 cut(s) 221, 275, 794
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 2 cut(s) 369, 419
BcuI ACTAGT 1 cut(s) 971
BfaI CTAG 5 cut(s) 320, 339, 963, 972, 984
BfoI RGCGCY 1 cut(s) 564
BfuI GTATCC 3 cut(s) 221, 275, 794
BglII AGATCT 1 cut(s) 116
BisI GCNGC 5 cut(s) 204, 763, 967, 1084, 1181
BlpI GCTNAGC 1 cut(s) 997
BlsI GCNGC 5 cut(s) 205, 764, 968, 1085, 1182
Bme1390I CCNGG 5 cut(s) 216, 369, 419, 522, 1229
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 3 cut(s) 78, 1078, 1226
BmrFI CCNGG 5 cut(s) 216, 369, 419, 522, 1229
BmsI GCATC 2 cut(s) 116, 250
BmtI GCTAGC 1 cut(s) 966
BpiI GAAGAC 2 cut(s) 696, 840
Bpu10I CCTNAGC 1 cut(s) 1106
Bpu1102I GCTNAGC 1 cut(s) 997
BpuEI CTTGAG 1 cut(s) 1256
BpuMI CCSGG 2 cut(s) 369, 419
BsaJI CCNNGG 2 cut(s) 214, 1111
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse1I ACTGG 3 cut(s) 109, 290, 557
Bse3DI GCAATG 3 cut(s) 351, 392, 772
BseBI CCWGG 3 cut(s) 216, 522, 1229
BseDI CCNNGG 2 cut(s) 214, 1111
BseGI GGATG 2 cut(s) 875, 1101
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMI GCAATG 3 cut(s) 351, 392, 772
BseMII CTCAG 3 cut(s) 704, 1097, 1272
BseNI ACTGG 3 cut(s) 109, 290, 557
BseRI GAGGAG 4 cut(s) 20, 586, 768, 894
BseXI GCAGC 4 cut(s) 190, 774, 978, 1070
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 1 cut(s) 718
BshNI GGYRCC 2 cut(s) 1076, 1224
BsiEI CGRYCG 1 cut(s) 373
BsiSI CCGG 2 cut(s) 369, 419
BslI CCNNNNNNNGG 1 cut(s) 714
BsmI GAATGC 4 cut(s) 19, 465, 611, 1094
BsnI GGCC 1 cut(s) 718
Bsp143I GATC 3 cut(s) 116, 820, 1057
Bsp1720I GCTNAGC 1 cut(s) 997
BspACI CCGC 4 cut(s) 206, 838, 1053, 1180
BspANI GGCC 1 cut(s) 718
BspCNI CTCAG 3 cut(s) 703, 1098, 1271
BspLI GGNNCC 3 cut(s) 78, 1078, 1226
BspOI GCTAGC 1 cut(s) 966
BspQI GCTCTTC 1 cut(s) 986
BspT107I GGYRCC 2 cut(s) 1076, 1224
BsrDI GCAATG 3 cut(s) 351, 392, 772
BsrI ACTGG 3 cut(s) 109, 290, 557
BssECI CCNNGG 2 cut(s) 214, 1111
BssMI GATC 3 cut(s) 116, 820, 1057
BssT1I CCWWGG 1 cut(s) 1111
Bst2UI CCWGG 3 cut(s) 216, 522, 1229
Bst4CI ACNGT 6 cut(s) 483, 599, 753, 829, 899, 1274
Bst6I CTCTTC 4 cut(s) 447, 986, 1075, 1153
BstC8I GCNNGC 5 cut(s) 239, 248, 465, 964, 1081
BstDEI CTNAG 4 cut(s) 690, 997, 1106, 1258
BstF5I GGATG 2 cut(s) 875, 1101
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 3 cut(s) 119, 823, 1060
BstMBI GATC 3 cut(s) 116, 820, 1057
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 243, 247
BstNI CCWGG 3 cut(s) 216, 522, 1229
BstNSI RCATGY 2 cut(s) 616, 1125
BstSCI CCNGG 5 cut(s) 214, 367, 417, 520, 1227
BstV1I GCAGC 4 cut(s) 190, 774, 978, 1070
BstV2I GAAGAC 2 cut(s) 696, 840
BstX2I RGATCY 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 485
BstYI RGATCY 1 cut(s) 116
BsuI GTATCC 3 cut(s) 221, 275, 794
BsuRI GGCC 1 cut(s) 718
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 2 cut(s) 875, 1101
BtsIMutI CAGTG 4 cut(s) 102, 239, 550, 687
Cac8I GCNNGC 5 cut(s) 239, 248, 465, 964, 1081
CfoI GCGC 1 cut(s) 563
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 403, 900
CspCI CAANNNNNGTGG 2 cut(s) 778, 813
CviAII CATG 5 cut(s) 438, 613, 868, 1122, 1190
CviQI GTAC 2 cut(s) 403, 900
DdeI CTNAG 4 cut(s) 690, 997, 1106, 1258
DpnI GATC 3 cut(s) 118, 822, 1059
DpnII GATC 3 cut(s) 116, 820, 1057
EaeI YGGCCR 1 cut(s) 716
Eam1104I CTCTTC 4 cut(s) 447, 986, 1075, 1153
EarI CTCTTC 4 cut(s) 447, 986, 1075, 1153
Eco130I CCWWGG 1 cut(s) 1111
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 3 cut(s) 69, 1134, 1182
EcoRII CCWGG 3 cut(s) 214, 520, 1227
EcoT14I CCWWGG 1 cut(s) 1111
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 1111
FaeI CATG 5 cut(s) 441, 616, 871, 1125, 1193
FatI CATG 5 cut(s) 437, 612, 867, 1121, 1189
FauI CCCGC 1 cut(s) 199
FauNDI CATATG 2 cut(s) 661, 1294
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 204, 763, 967, 1084, 1181
FokI GGATG 2 cut(s) 862, 1088
Fsp4HI GCNGC 5 cut(s) 204, 763, 967, 1084, 1181
FspBI CTAG 5 cut(s) 320, 339, 963, 972, 984
GlaI GCGC 1 cut(s) 562
GluI GCNGC 5 cut(s) 204, 763, 967, 1084, 1181
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 1 cut(s) 718
HapII CCGG 2 cut(s) 369, 419
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 563
Hin1II CATG 5 cut(s) 441, 616, 871, 1125, 1193
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 8 cut(s) 62, 262, 581, 646, 677, 872, 913, 1256
HpaII CCGG 2 cut(s) 369, 419
HphI GGTGA 1 cut(s) 1127
Hpy166II GTNNAC 2 cut(s) 160, 645
Hpy188III TCNNGA 6 cut(s) 123, 266, 568, 984, 1047, 1105
Hpy8I GTNNAC 2 cut(s) 160, 645
Hpy99I CGWCG 1 cut(s) 1250
HpyAV CCTTC 5 cut(s) 44, 519, 648, 665, 1032
HpyCH4III ACNGT 6 cut(s) 483, 599, 753, 829, 899, 1274
HpyCH4IV ACGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 247
HpyF3I CTNAG 4 cut(s) 690, 997, 1106, 1258
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 5 cut(s) 441, 616, 871, 1125, 1193
HspAI GCGC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 3 cut(s) 116, 820, 1057
LguI GCTCTTC 1 cut(s) 986
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 4 cut(s) 190, 774, 978, 1070
LweI GCATC 2 cut(s) 116, 250
MaeI CTAG 5 cut(s) 320, 339, 963, 972, 984
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 488, 772
MalI GATC 3 cut(s) 118, 822, 1059
MboI GATC 3 cut(s) 116, 820, 1057
MfeI CAATTG 1 cut(s) 55
MflI RGATCY 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 718
MluCI AATT 7 cut(s) 55, 187, 504, 540, 733, 792, 813
MluNI TGGCCA 1 cut(s) 718
MlyI GAGTC 2 cut(s) 640, 1250
MmeI TCCRAC 2 cut(s) 74, 134
MnlI CCTC 8 cut(s) 96, 136, 289, 564, 789, 915, 1157, 1215
Mox20I TGGCCA 1 cut(s) 718
Mph1103I ATGCAT 1 cut(s) 618
MscI TGGCCA 1 cut(s) 718
MseI TTAA 4 cut(s) 177, 276, 413, 543
MslI CAYNNNNRTG 3 cut(s) 555, 944, 1188
Msp20I TGGCCA 1 cut(s) 718
MspA1I CMGCKG 1 cut(s) 1083
MspI CCGG 2 cut(s) 369, 419
MspR9I CCNGG 5 cut(s) 216, 369, 419, 522, 1229
MunI CAATTG 1 cut(s) 55
Mva1269I GAATGC 4 cut(s) 19, 465, 611, 1094
MvaI CCWGG 3 cut(s) 216, 522, 1229
MwoI GCNNNNNNNGC 2 cut(s) 243, 247
NciI CCSGG 2 cut(s) 369, 419
NdeI CATATG 2 cut(s) 661, 1294
NdeII GATC 3 cut(s) 116, 820, 1057
NheI GCTAGC 1 cut(s) 962
NlaIII CATG 5 cut(s) 441, 616, 871, 1125, 1193
NlaIV GGNNCC 3 cut(s) 78, 1078, 1226
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 2 cut(s) 616, 1125
OliI CACNNNNGTG 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 986
PctI GAATGC 4 cut(s) 19, 465, 611, 1094
PfeI GAWTC 6 cut(s) 62, 262, 581, 677, 872, 913
PflFI GACNNNGTC 2 cut(s) 164, 1157
PflMI CCANNNNNTGG 1 cut(s) 714
PkrI GCNGC 5 cut(s) 205, 764, 968, 1085, 1182
PleI GAGTC 2 cut(s) 640, 1250
PpsI GAGTC 2 cut(s) 640, 1250
Psp6I CCWGG 3 cut(s) 214, 520, 1227
PspGI CCWGG 3 cut(s) 214, 520, 1227
PspN4I GGNNCC 3 cut(s) 78, 1078, 1226
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 116
PsyI GACNNNGTC 2 cut(s) 164, 1157
PvuII CAGCTG 1 cut(s) 1083
RsaI GTAC 2 cut(s) 404, 901
RsaNI GTAC 2 cut(s) 403, 900
RseI CAYNNNNRTG 3 cut(s) 555, 944, 1188
SapI GCTCTTC 1 cut(s) 986
SaqAI TTAA 4 cut(s) 177, 276, 413, 543
SatI GCNGC 5 cut(s) 204, 763, 967, 1084, 1181
Sau3AI GATC 3 cut(s) 116, 820, 1057
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 640, 1250
ScrFI CCNGG 5 cut(s) 216, 369, 419, 522, 1229
SfaNI GCATC 2 cut(s) 116, 250
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 3 cut(s) 555, 944, 1188
SmlI CTYRAG 1 cut(s) 1235
SmoI CTYRAG 1 cut(s) 1235
SpeI ACTAGT 1 cut(s) 971
Sse9I AATT 7 cut(s) 55, 187, 504, 540, 733, 792, 813
SsiI CCGC 4 cut(s) 206, 838, 1053, 1180
SspMI CTAG 5 cut(s) 320, 339, 963, 972, 984
StyD4I CCNGG 5 cut(s) 214, 367, 417, 520, 1227
StyI CCWWGG 1 cut(s) 1111
TaaI ACNGT 6 cut(s) 483, 599, 753, 829, 899, 1274
TaiI ACGT 1 cut(s) 223
TaqI TCGA 4 cut(s) 373, 635, 831, 1142
TasI AATT 7 cut(s) 55, 187, 504, 540, 733, 792, 813
TatI WGTACW 1 cut(s) 899
TauI GCSGC 1 cut(s) 1183
TfiI GAWTC 6 cut(s) 62, 262, 581, 677, 872, 913
Tru1I TTAA 4 cut(s) 177, 276, 413, 543
Tru9I TTAA 4 cut(s) 177, 276, 413, 543
TscAI CASTG 4 cut(s) 109, 239, 557, 687
TseI GCWGC 4 cut(s) 203, 762, 966, 1083
TspDTI ATGAA 6 cut(s) 340, 465, 573, 856, 864, 1206
TspRI CASTG 4 cut(s) 109, 239, 557, 687
Tth111I GACNNNGTC 2 cut(s) 164, 1157
Van91I CCANNNNNTGG 1 cut(s) 714
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 504
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 2 cut(s) 616, 1125
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 5 cut(s) 320, 339, 963, 972, 984
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.