Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Forward (+)

16256704 .. 16259818

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG176700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGTTACTGGCTTTGTTTTTGAAGGTATCCCTGGCCGTTCAGATGTTCAGTGCCTGCATCGCTGGCAAAAAGTTTTGAATCCTGAAATCATCAAGGGATACTGGACAAAGGAGGAAGATGATTGTATAATCAAACTGGTTGAAAAGTATGGTGCTAGAAGATGGTCTGTCATTGCAAAGTTTTTACCAGGTCGAATAGGCAAGCAATGCAGAGAAAGGTGGTACAATCATTTAAGCCCGGCTATAAACAAAGATGCATGGACAGAAGAAGAGGAAAGAATTCTTGCTTTCTACCACCAACAGTATGGTAACAAGTGGGCAGAAATAGCAAGGTTTCTACCTGGAAGGACTGACAATGCAATTAAAAACTACTGGAATGGCGCATTCAAGAGGAAAGAAGATTCATACTCTCCCAATGGTAATGAGTGGGACATGCATCCTGATATCTGTATTGATGAACTAGGATCAGATTTTGTAGGAGTTAAAACAGTCAGACAGAAGTTTGATAATGCTTGTTCTACAGAGTGGACTCTTGGAAGGTCATATGGTTCAGAAGGAAAATCTGTGAAATCACAGAAATGCAGGTCTTCAAAAACAGGGCCAAGTGGTTTAATCAATTTGCACACTACGGCAGAGTCTGATTACAGCATTGTTGCTACTCCTCTTGGTGTCAAAAGTGGATCTTGCAAACAAATTGCTGATCATACAGGCGAATACCGCTCTTTTCCAAACTCTCCATTGGTTTTCATGGATTCATCCCCTTCTACCAACTCAAACTGTACTCCTCCAAAGATTCCACTTTGCTATTCAACTCCAACCAACAGTGTGCAGAATGTCTATGCTAGCAGCACCAGTCCAAAATCTAGATTGAAGAGCTTAGCAAGGACTTTCAAAAATACTCCTTCCATCATAAGAAAGAGAGCTTCCAGAACCGCAGATCATGCCAACTTTTCTGGTGCCAGCTGCTCAACCGCATTGAACATCCTGAGTCTTGATGAAGCAGCTTTCAATAGCAGAGACTCCAACTCTTCAGACTATGTCAGAGGTTTATCTTCAATGCGGCATAGACCCAAAACTTCAGATGCTTATAAATCTCTTGGGAGGTGCCTGGAACATGAATTTGACGATGAAAATGACTCGGGTATCGCTAACTGTGGCAAAGTAGTCTCTGCATATGTTGGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

395

Amino Acids

44.17

Weight (kDa)

8.86

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 78	1.3e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	35 - 92	2.9e-18	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	84 - 126	3.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	87 - 137	2.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1089
Acc36I	ACCTGC	1 cut(s)	573
AccB1I	GGYRCC	2 cut(s)	956, 1104
AccBSI	CCGCTC	1 cut(s)	720
AciI	CCGC	4 cut(s)	718, 933, 972, 1060
AclWI	GGATC	2 cut(s)	472, 688
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	279, 1118
AcuI	CTGAAG	2 cut(s)	1014, 1062
AfaI	GTAC	2 cut(s)	224, 781
AjnI	CCWGG	4 cut(s)	31, 187, 340, 1107
AluBI	AGCT	4 cut(s)	876, 923, 963, 1004
AluI	AGCT	4 cut(s)	876, 923, 963, 1004
Alw26I	GTCTC	2 cut(s)	1011, 1171
AlwI	GGATC	2 cut(s)	472, 688
AlwNI	CAGNNNCTG	2 cut(s)	55, 638
Ama87I	CYCGRG	1 cut(s)	1138
AoxI	GGCC	2 cut(s)	34, 599
ApeKI	GCWGC	3 cut(s)	846, 963, 1001
ApoI	RAATTY	2 cut(s)	279, 1118
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	1 cut(s)	239
AsuNHI	GCTAGC	1 cut(s)	842
AvaI	CYCGRG	1 cut(s)	1138
BaeI	ACNNNNGTAYC	2 cut(s)	1126, 1159
BanI	GGYRCC	2 cut(s)	956, 1104
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	858, 950, 1013
BccI	CCATC	2 cut(s)	156, 914
BceAI	ACGGC	2 cut(s)	21, 645
BciT130I	CCWGG	4 cut(s)	33, 189, 342, 1109
BciVI	GTATCC	2 cut(s)	38, 92
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	1011, 1171
BfaI	CTAG	4 cut(s)	156, 461, 843, 864
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	573
BfuI	GTATCC	2 cut(s)	38, 92
BisI	GCNGC	4 cut(s)	847, 964, 1002, 1061
BlpI	GCTNAGC	1 cut(s)	877
BlsI	GCNGC	4 cut(s)	848, 965, 1003, 1062
Bme1390I	CCNGG	5 cut(s)	33, 189, 239, 342, 1109
BmeT110I	CYCGRG	1 cut(s)	1138
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	958, 1106
BmrFI	CCNGG	5 cut(s)	33, 189, 239, 342, 1109
BmsI	GCATC	4 cut(s)	67, 244, 445, 1072
BmtI	GCTAGC	1 cut(s)	846
BpiI	GAAGAC	1 cut(s)	579
Bpu1102I	GCTNAGC	1 cut(s)	877
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	5 cut(s)	13, 107, 141, 377, 852
Bse3DI	GCAATG	2 cut(s)	171, 212
BseBI	CCWGG	4 cut(s)	33, 189, 342, 1109
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	3 cut(s)	436, 755, 981
BseMI	GCAATG	2 cut(s)	171, 212
BseMII	CTCAG	1 cut(s)	977
BseNI	ACTGG	5 cut(s)	13, 107, 141, 377, 852
BseRI	GAGGAG	2 cut(s)	651, 774
BseXI	GCAGC	3 cut(s)	858, 950, 1013
BsgI	GTGCAG	1 cut(s)	848
BshFI	GGCC	2 cut(s)	36, 601
BshNI	GGYRCC	2 cut(s)	956, 1104
BsiHKCI	CYCGRG	1 cut(s)	1138
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	1011, 1171
BsmFI	GGGAC	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	2 cut(s)	36, 601
BsoBI	CYCGRG	1 cut(s)	1138
Bsp143I	GATC	4 cut(s)	464, 680, 700, 937
Bsp1720I	GCTNAGC	1 cut(s)	877
BspACI	CCGC	4 cut(s)	718, 933, 972, 1060
BspANI	GGCC	2 cut(s)	36, 601
BspCNI	CTCAG	1 cut(s)	978
BspLI	GGNNCC	2 cut(s)	958, 1106
BspMI	ACCTGC	1 cut(s)	573
BspOI	GCTAGC	1 cut(s)	846
BspPI	GGATC	2 cut(s)	472, 688
BspQI	GCTCTTC	1 cut(s)	866
BspT107I	GGYRCC	2 cut(s)	956, 1104
BsrBI	CCGCTC	1 cut(s)	720
BsrDI	GCAATG	2 cut(s)	171, 212
BsrI	ACTGG	5 cut(s)	13, 107, 141, 377, 852
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	464, 680, 700, 937
Bst2UI	CCWGG	4 cut(s)	33, 189, 342, 1109
Bst4CI	ACNGT	5 cut(s)	303, 490, 779, 824, 1154
Bst6I	CTCTTC	3 cut(s)	264, 866, 1033
BstAPI	GCANNNNNTGC	2 cut(s)	207, 941
BstC8I	GCNNGC	5 cut(s)	56, 65, 203, 844, 961
BstDEI	CTNAG	2 cut(s)	877, 986
BstF5I	GGATG	3 cut(s)	436, 755, 981
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	4 cut(s)	467, 683, 703, 940
BstMAI	GTCTC	2 cut(s)	1011, 1171
BstMBI	GATC	4 cut(s)	464, 680, 700, 937
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 64, 207, 326, 717, 941
BstNI	CCWGG	4 cut(s)	33, 189, 342, 1109
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	5 cut(s)	31, 187, 237, 340, 1107
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	858, 950, 1013
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	680
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	680
BsuI	GTATCC	2 cut(s)	38, 92
BsuRI	GGCC	2 cut(s)	36, 601
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	436, 755, 981
BtsIMutI	CAGTG	2 cut(s)	56, 829
BveI	ACCTGC	1 cut(s)	573
Cac8I	GCNNGC	5 cut(s)	56, 65, 203, 844, 961
CaiI	CAGNNNCTG	2 cut(s)	55, 638
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	223, 780
CviAII	CATG	5 cut(s)	258, 433, 748, 941, 1115
CviJI	RGCY	9 cut(s)	12, 36, 237, 242, 601, 876, 923, 963, 1004
CviKI_1	RGCY	9 cut(s)	12, 36, 237, 242, 601, 876, 923, 963, 1004
CviQI	GTAC	2 cut(s)	223, 780
DdeI	CTNAG	2 cut(s)	877, 986
DpnI	GATC	4 cut(s)	466, 682, 702, 939
DpnII	GATC	4 cut(s)	464, 680, 700, 937
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	3 cut(s)	264, 866, 1033
EarI	CTCTTC	3 cut(s)	264, 866, 1033
Eco32I	GATATC	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	1014, 1062
Eco88I	CYCGRG	1 cut(s)	1138
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	4 cut(s)	31, 187, 340, 1107
EcoRV	GATATC	1 cut(s)	445
EcoT22I	ATGCAT	2 cut(s)	259, 438
FaeI	CATG	5 cut(s)	261, 436, 751, 944, 1118
FalI	AAGNNNNNCTT	2 cut(s)	667, 699
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	5 cut(s)	257, 432, 747, 940, 1114
FauNDI	CATATG	2 cut(s)	544, 1174
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	847, 964, 1002, 1061
FokI	GGATG	3 cut(s)	423, 742, 968
Fsp4HI	GCNGC	4 cut(s)	847, 964, 1002, 1061
FspBI	CTAG	4 cut(s)	156, 461, 843, 864
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	4 cut(s)	847, 964, 1002, 1061
HaeIII	GGCC	2 cut(s)	36, 601
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	5 cut(s)	261, 436, 751, 944, 1118
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	9 cut(s)	79, 401, 529, 635, 752, 793, 988, 1019, 1136
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	8 cut(s)	43, 469, 494, 553, 640, 1033, 1043, 1081
Hpy188III	TCNNGA	7 cut(s)	83, 388, 440, 864, 927, 985, 992
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	6 cut(s)	17, 339, 531, 548, 771, 912
HpyCH4III	ACNGT	5 cut(s)	303, 490, 779, 824, 1154
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 64, 207, 326, 717, 941
HpyF3I	CTNAG	2 cut(s)	877, 986
Hsp92II	CATG	5 cut(s)	261, 436, 751, 944, 1118
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	464, 680, 700, 937
LguI	GCTCTTC	1 cut(s)	866
Lsp1109I	GCAGC	3 cut(s)	858, 950, 1013
LweI	GCATC	4 cut(s)	67, 244, 445, 1072
MabI	ACCWGGT	1 cut(s)	187
MaeI	CTAG	4 cut(s)	156, 461, 843, 864
MaeIII	GTNAC	2 cut(s)	4, 308
MalI	GATC	4 cut(s)	466, 682, 702, 939
MbiI	CCGCTC	1 cut(s)	720
MboI	GATC	4 cut(s)	464, 680, 700, 937
MboII	GAAGA	9 cut(s)	128, 171, 278, 281, 410, 579, 883, 1020, 1044
MflI	RGATCY	1 cut(s)	680
MluCI	AATT	5 cut(s)	279, 360, 616, 693, 1118
MlyI	GAGTC	5 cut(s)	523, 644, 997, 1013, 1130
MmeI	TCCRAC	2 cut(s)	839, 1047
MnlI	CCTC	7 cut(s)	106, 265, 384, 672, 795, 1037, 1095
Mph1103I	ATGCAT	2 cut(s)	259, 438
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	4 cut(s)	233, 363, 483, 611
MslI	CAYNNNNRTG	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	963
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	5 cut(s)	33, 189, 239, 342, 1109
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	4 cut(s)	33, 189, 342, 1109
MwoI	GCNNNNNNNGC	6 cut(s)	60, 64, 207, 326, 717, 941
NciI	CCSGG	1 cut(s)	239
NdeI	CATATG	2 cut(s)	544, 1174
NdeII	GATC	4 cut(s)	464, 680, 700, 937
NheI	GCTAGC	1 cut(s)	842
NlaIII	CATG	5 cut(s)	261, 436, 751, 944, 1118
NlaIV	GGNNCC	2 cut(s)	958, 1106
NsiI	ATGCAT	2 cut(s)	259, 438
NspI	RCATGY	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	866
PctI	GAATGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	79, 401, 752, 793
PflFI	GACNNNGTC	1 cut(s)	1037
PkrI	GCNGC	4 cut(s)	848, 965, 1003, 1062
PleI	GAGTC	5 cut(s)	523, 643, 996, 1013, 1130
PpsI	GAGTC	5 cut(s)	523, 643, 996, 1013, 1130
PsiI	TTATAA	1 cut(s)	1089
Psp6I	CCWGG	4 cut(s)	31, 187, 340, 1107
PspGI	CCWGG	4 cut(s)	31, 187, 340, 1107
PspN4I	GGNNCC	2 cut(s)	958, 1106
PspPI	GGNCC	1 cut(s)	599
PstNI	CAGNNNCTG	2 cut(s)	55, 638
PsuI	RGATCY	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	1037
PvuII	CAGCTG	1 cut(s)	963
RsaI	GTAC	2 cut(s)	224, 781
RsaNI	GTAC	2 cut(s)	223, 780
RseI	CAYNNNNRTG	1 cut(s)	577
SapI	GCTCTTC	1 cut(s)	866
SaqAI	TTAA	4 cut(s)	233, 363, 483, 611
SatI	GCNGC	4 cut(s)	847, 964, 1002, 1061
Sau3AI	GATC	4 cut(s)	464, 680, 700, 937
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	5 cut(s)	523, 644, 997, 1013, 1130
ScrFI	CCNGG	5 cut(s)	33, 189, 239, 342, 1109
SexAI	ACCWGGT	1 cut(s)	187
SfaNI	GCATC	4 cut(s)	67, 244, 445, 1072
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	577
Sse9I	AATT	5 cut(s)	279, 360, 616, 693, 1118
SsiI	CCGC	4 cut(s)	718, 933, 972, 1060
SspMI	CTAG	4 cut(s)	156, 461, 843, 864
StyD4I	CCNGG	5 cut(s)	31, 187, 237, 340, 1107
TaaI	ACNGT	5 cut(s)	303, 490, 779, 824, 1154
TaqI	TCGA	1 cut(s)	193
TasI	AATT	5 cut(s)	279, 360, 616, 693, 1118
TatI	WGTACW	1 cut(s)	779
TauI	GCSGC	1 cut(s)	1063
TfiI	GAWTC	4 cut(s)	79, 401, 752, 793
Tru1I	TTAA	4 cut(s)	233, 363, 483, 611
Tru9I	TTAA	4 cut(s)	233, 363, 483, 611
TscAI	CASTG	2 cut(s)	56, 829
TseI	GCWGC	3 cut(s)	846, 963, 1001
TspDTI	ATGAA	7 cut(s)	393, 471, 736, 744, 1011, 1131, 1143
TspRI	CASTG	2 cut(s)	56, 829
Tth111I	GACNNNGTC	1 cut(s)	1037
XapI	RAATTY	2 cut(s)	279, 1118
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	4 cut(s)	156, 461, 843, 864
Zsp2I	ATGCAT	2 cut(s)	259, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.