Prupe.5G093400_v2.0.a1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
10338382 .. 10342007
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G093400.2

Sequence Viewer

Length: 1293 bp
ATGGCGAAAGTGAAAAAGGAGCAGCTGCAGGAGGTGGTTGTGGATCCATACGAGAAAATTGGTTTCCTTTTGCAAGCATTATATGAAACTGAAGGCTGTTTTAACTCGCCTGCGTCCAAGCCAAGCTCTGCTACTCGGAGAGCCACTGGTCCGATGAGACGGTCAGCGAAATGCTGGACAGAGGAAGAGGACAATCTTCTAGGAGAGCTGGTCAGAAAGTTTAACAGGAGTAATTGGAAGGAAATAGCTGCGTGTCTCCCTGGGCGCACAGATGTTCAGTGCCTGCAGCGCTGGCAAAAGGTTCTAAATCCTGAAATTGTGAAGGGACCCTGGACAAAGGAGGAAGACAACTGCATAATCAAACAAGTTGAGAGTCATGGTGCTAAAAGATGGTCTGTTATTGCAAAGTTCTTACCAGGTCGAATGGGCAAGCAATGCCGAGAAAGGTGGTACAATCACTTATGCCCGGCTATAAATAGAAATGCATGGACAGAAGAAGAGGAGTGGGTTCTTACTTACTACCACCAACTCTTTGGTAACAAGTGGGCAGAAATAGCCAGGTTTCTACCTGGAAGGACTGACAATGCAATTAAAAATCACTGGAACTGCACACTGAAGAGAAAATTAGATTCATACTCACCTAATGGTTGTGATGTGGATATGCATCCTGATGTCTGGAACGGTGAATTAAGATCGGGCCTTGTCGAGATTAACCCAGCCGGACAGATTTCTGATAGACTGGCCTCACTCAATCAGAGAACAGGGTTGGAGATTAGTGATAGCGCTTGCTCTACAGAGTTGACTCTTGGATGTTCTTATAGACATGAACTTTGTTCAGAATGGAAACCTGTCAAAGTGCAGAAATGCAGATCATCAGATAGAGGAGCAAGTAGTTTGACAAATCTAATCACAAGTGGATCTTCCAAACACAGCCCTCTATCAGCCTCTTCATCGGTTTTCGTGGGTGCATCTGCTTCTACCCGGTCCTCCCCCCTTGAGAGTCCATCCTGCTACTCTACACCCCAAAGCCGTCCGCAGAATGTTAATGTGAATCTCAGCAGTGGCAGCAGTCCCGGGTCGAGACTGAAGAACTTGGCATTGAGTTTCAAAAATACTCCTTCCATCATAAGAAAGAGAAGTTCCAGAAGACCTGATGCTTCTTCAGCTGCCGTTAAATCTCTAGGAAGGTGCCTGGAACGTGAATTCGACGCCGAAAATGATTCAGGTGTTACTAAATGTGGCCAACTTTTCTCTGCACATGCTACTTCATCAGACGTTAACGTTGGTGTATAG

Protein Analysis

431

Amino Acids

47.88

Weight (kDa)

9.04

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1188
AciI CCGC 1 cut(s) 1034
AclI AACGTT 1 cut(s) 1281
AclWI GGATC 3 cut(s) 38, 51, 925
AcoI YGGCCR 1 cut(s) 1240
AcsI RAATTY 1 cut(s) 1202
AcuI CTGAAG 4 cut(s) 111, 635, 1106, 1146
AcyI GRCGYC 1 cut(s) 1209
AfaI GTAC 1 cut(s) 452
AfeI AGCGCT 2 cut(s) 290, 784
AgsI TTSAA 1 cut(s) 1108
AjnI CCWGG 6 cut(s) 259, 329, 415, 557, 568, 1191
AluBI AGCT 5 cut(s) 25, 126, 208, 248, 1166
AluI AGCT 5 cut(s) 25, 126, 208, 248, 1166
Alw26I GTCTC 3 cut(s) 151, 260, 1075
AlwI GGATC 3 cut(s) 38, 51, 925
AlwNI CAGNNNCTG 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 1073
Aor51HI AGCGCT 2 cut(s) 290, 784
AoxI GGCC 3 cut(s) 697, 741, 1240
ApeKI GCWGC 6 cut(s) 22, 25, 248, 286, 1065, 1166
ApoI RAATTY 1 cut(s) 1202
ArsI GACNNNNNNTTYG 2 cut(s) 813, 845
AspLEI GCGC 3 cut(s) 267, 291, 785
AspS9I GGNCC 4 cut(s) 149, 326, 697, 984
AsuC2I CCSGG 4 cut(s) 467, 982, 1074, 1075
AsuHPI GGTGA 2 cut(s) 630, 695
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 3 cut(s) 149, 326, 984
BalI TGGCCA 1 cut(s) 1242
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 1188
BbsI GAAGAC 2 cut(s) 351, 1153
BbvI GCAGC 6 cut(s) 12, 34, 235, 298, 1077, 1153
BccI CCATC 3 cut(s) 384, 1012, 1130
BceAI ACGGC 2 cut(s) 1014, 1154
BciT130I CCWGG 6 cut(s) 261, 331, 417, 559, 570, 1193
BcnI CCSGG 4 cut(s) 467, 982, 1074, 1075
BcoDI GTCTC 3 cut(s) 151, 260, 1075
BfaI CTAG 2 cut(s) 200, 1181
BfmI CTRYAG 3 cut(s) 26, 284, 792
BfoI RGCGCY 2 cut(s) 292, 786
BisI GCNGC 6 cut(s) 23, 26, 249, 287, 1066, 1167
BlsI GCNGC 6 cut(s) 24, 27, 250, 288, 1067, 1168
Bme18I GGWCC 3 cut(s) 149, 326, 984
BmeT110I CYCGRG 1 cut(s) 1073
BmgT120I GGNCC 4 cut(s) 149, 326, 697, 984
BmiI GGNNCC 4 cut(s) 45, 327, 328, 1190
BmsI GCATC 3 cut(s) 673, 977, 1144
BpiI GAAGAC 2 cut(s) 351, 1153
BpuEI CTTGAG 1 cut(s) 1016
BpuMI CCSGG 4 cut(s) 467, 982, 1074, 1075
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 1209
BsaJI CCNNGG 4 cut(s) 259, 260, 329, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bse1I ACTGG 3 cut(s) 151, 605, 744
Bse3DI GCAATG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 6 cut(s) 261, 331, 417, 559, 570, 1193
BseDI CCNNGG 4 cut(s) 259, 260, 329, 1073
BseGI GGATG 3 cut(s) 664, 815, 1004
BseJI GATNNNNATC 1 cut(s) 663
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 1069
BseNI ACTGG 3 cut(s) 151, 605, 744
BseRI GAGGAG 2 cut(s) 515, 897
BseXI GCAGC 6 cut(s) 12, 34, 235, 298, 1077, 1153
BseYI CCCAGC 1 cut(s) 715
BsgI GTGCAG 3 cut(s) 592, 878, 1239
BshFI GGCC 3 cut(s) 699, 743, 1242
BshNI GGYRCC 1 cut(s) 1188
BsiHKCI CYCGRG 1 cut(s) 1073
BsiSI CCGG 4 cut(s) 467, 720, 982, 1074
BslFI GGGAC 2 cut(s) 339, 1056
BsmAI GTCTC 3 cut(s) 151, 260, 1075
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 339, 1056
BsnI GGCC 3 cut(s) 699, 743, 1242
BsoBI CYCGRG 1 cut(s) 1073
Bsp143I GATC 4 cut(s) 43, 692, 869, 917
BspACI CCGC 1 cut(s) 1034
BspANI GGCC 3 cut(s) 699, 743, 1242
BspCNI CTCAG 1 cut(s) 1068
BspLI GGNNCC 4 cut(s) 45, 327, 328, 1190
BspMAI CTGCAG 2 cut(s) 30, 288
BspPI GGATC 3 cut(s) 38, 51, 925
BspT107I GGYRCC 1 cut(s) 1188
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 3 cut(s) 151, 605, 744
BssECI CCNNGG 4 cut(s) 259, 260, 329, 1073
BssMI GATC 4 cut(s) 43, 692, 869, 917
BssNI GRCGYC 1 cut(s) 1209
Bst2UI CCWGG 6 cut(s) 261, 331, 417, 559, 570, 1193
Bst4CI ACNGT 2 cut(s) 162, 683
Bst6I CTCTTC 4 cut(s) 180, 492, 611, 952
BstACI GRCGYC 1 cut(s) 1209
BstAPI GCANNNNNTGC 1 cut(s) 435
BstC8I GCNNGC 6 cut(s) 75, 111, 284, 293, 431, 787
BstDEI CTNAG 1 cut(s) 1055
BstF5I GGATG 3 cut(s) 664, 815, 1004
BstH2I RGCGCY 2 cut(s) 292, 786
BstHHI GCGC 3 cut(s) 267, 291, 785
BstKTI GATC 4 cut(s) 46, 695, 872, 920
BstMAI GTCTC 3 cut(s) 151, 260, 1075
BstMBI GATC 4 cut(s) 43, 692, 869, 917
BstMWI GCNNNNNNNGC 6 cut(s) 288, 292, 435, 554, 1065, 1163
BstNI CCWGG 6 cut(s) 261, 331, 417, 559, 570, 1193
BstNSI RCATGY 1 cut(s) 1262
BstSFI CTRYAG 3 cut(s) 26, 284, 792
BstV1I GCAGC 6 cut(s) 12, 34, 235, 298, 1077, 1153
BstV2I GAAGAC 2 cut(s) 351, 1153
BstX2I RGATCY 2 cut(s) 43, 917
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 2 cut(s) 43, 917
BsuRI GGCC 3 cut(s) 699, 743, 1242
BtsCI GGATG 3 cut(s) 664, 815, 1004
BtsI GCAGTG 1 cut(s) 1066
BtsIMutI CAGTG 5 cut(s) 144, 284, 598, 611, 1066
Cac8I GCNNGC 6 cut(s) 75, 111, 284, 293, 431, 787
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 3 cut(s) 267, 291, 785
Cfr13I GGNCC 4 cut(s) 149, 326, 697, 984
Cfr9I CCCGGG 1 cut(s) 1073
CseI GACGC 2 cut(s) 102, 1217
CsiI ACCWGGT 1 cut(s) 415
Csp6I GTAC 1 cut(s) 451
CviAII CATG 4 cut(s) 377, 486, 824, 1259
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 1055
DpnI GATC 4 cut(s) 45, 694, 871, 919
DpnII GATC 4 cut(s) 43, 692, 869, 917
EaeI YGGCCR 1 cut(s) 1240
Eam1104I CTCTTC 4 cut(s) 180, 492, 611, 952
EarI CTCTTC 4 cut(s) 180, 492, 611, 952
Eco47I GGWCC 3 cut(s) 149, 326, 984
Eco47III AGCGCT 2 cut(s) 290, 784
Eco57I CTGAAG 4 cut(s) 111, 635, 1106, 1146
Eco88I CYCGRG 1 cut(s) 1073
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 1202
EcoRII CCWGG 6 cut(s) 259, 329, 415, 557, 568, 1191
EcoT22I ATGCAT 2 cut(s) 487, 666
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 4 cut(s) 380, 489, 827, 1262
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FaqI GGGAC 2 cut(s) 339, 1056
FatI CATG 4 cut(s) 376, 485, 823, 1258
Fnu4HI GCNGC 6 cut(s) 23, 26, 249, 287, 1066, 1167
FokI GGATG 3 cut(s) 651, 822, 991
Fsp4HI GCNGC 6 cut(s) 23, 26, 249, 287, 1066, 1167
FspBI CTAG 2 cut(s) 200, 1181
GlaI GCGC 3 cut(s) 266, 290, 784
GluI GCNGC 6 cut(s) 23, 26, 249, 287, 1066, 1167
GsaI CCCAGC 1 cut(s) 719
HaeII RGCGCY 2 cut(s) 292, 786
HaeIII GGCC 3 cut(s) 699, 743, 1242
HapII CCGG 4 cut(s) 467, 720, 982, 1074
HgaI GACGC 2 cut(s) 102, 1217
HhaI GCGC 3 cut(s) 267, 291, 785
Hin1I GRCGYC 1 cut(s) 1209
Hin1II CATG 4 cut(s) 380, 489, 827, 1262
Hin6I GCGC 3 cut(s) 265, 289, 783
HinP1I GCGC 3 cut(s) 265, 289, 783
HincII GTYRAC 2 cut(s) 801, 1279
HindII GTYRAC 2 cut(s) 801, 1279
HinfI GANTC 6 cut(s) 373, 629, 802, 1000, 1051, 1220
HpaI GTTAAC 1 cut(s) 1279
HpaII CCGG 4 cut(s) 467, 720, 982, 1074
HphI GGTGA 2 cut(s) 630, 695
Hpy166II GTNNAC 2 cut(s) 801, 1279
Hpy188I TCNGA 8 cut(s) 138, 153, 215, 733, 756, 838, 877, 1273
Hpy188III TCNNGA 6 cut(s) 311, 668, 676, 706, 1080, 1143
Hpy8I GTNNAC 2 cut(s) 801, 1279
Hpy99I CGWCG 1 cut(s) 1211
HpyAV CCTTC 6 cut(s) 86, 232, 316, 567, 1128, 1179
HpyCH4III ACNGT 2 cut(s) 162, 683
HpyCH4IV ACGT 3 cut(s) 1198, 1275, 1281
HpyF10VI GCNNNNNNNGC 6 cut(s) 288, 292, 435, 554, 1065, 1163
HpyF3I CTNAG 1 cut(s) 1055
HpySE526I ACGT 3 cut(s) 1198, 1275, 1281
Hsp92I GRCGYC 1 cut(s) 1209
Hsp92II CATG 4 cut(s) 380, 489, 827, 1262
HspAI GCGC 3 cut(s) 265, 289, 783
KflI GGGWCCC 1 cut(s) 326
KspAI GTTAAC 1 cut(s) 1279
Kzo9I GATC 4 cut(s) 43, 692, 869, 917
LmnI GCTCC 2 cut(s) 19, 884
Lsp1109I GCAGC 6 cut(s) 12, 34, 235, 298, 1077, 1153
LweI GCATC 3 cut(s) 673, 977, 1144
MabI ACCWGGT 1 cut(s) 415
MaeI CTAG 2 cut(s) 200, 1181
MaeII ACGT 3 cut(s) 1198, 1275, 1281
MaeIII GTNAC 2 cut(s) 536, 1228
MalI GATC 4 cut(s) 45, 694, 871, 919
MboI GATC 4 cut(s) 43, 692, 869, 917
MflI RGATCY 2 cut(s) 43, 917
MlsI TGGCCA 1 cut(s) 1242
MluCI AATT 7 cut(s) 57, 232, 315, 588, 623, 686, 1202
MluNI TGGCCA 1 cut(s) 1242
MlyI GAGTC 3 cut(s) 382, 796, 1009
MmeI TCCRAC 1 cut(s) 747
Mox20I TGGCCA 1 cut(s) 1242
Mph1103I ATGCAT 2 cut(s) 487, 666
MscI TGGCCA 1 cut(s) 1242
MseI TTAA 8 cut(s) 102, 222, 591, 689, 711, 1044, 1173, 1278
MslI CAYNNNNRTG 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 1242
MspA1I CMGCKG 2 cut(s) 25, 1166
MspI CCGG 4 cut(s) 467, 720, 982, 1074
MvaI CCWGG 6 cut(s) 261, 331, 417, 559, 570, 1193
MwoI GCNNNNNNNGC 6 cut(s) 288, 292, 435, 554, 1065, 1163
NciI CCSGG 4 cut(s) 467, 982, 1074, 1075
NdeII GATC 4 cut(s) 43, 692, 869, 917
NlaIII CATG 4 cut(s) 380, 489, 827, 1262
NlaIV GGNNCC 4 cut(s) 45, 327, 328, 1190
NmeAIII GCCGAG 1 cut(s) 464
NsiI ATGCAT 2 cut(s) 487, 666
NspI RCATGY 1 cut(s) 1262
PasI CCCWGGG 1 cut(s) 260
PfeI GAWTC 3 cut(s) 629, 1051, 1220
PkrI GCNGC 6 cut(s) 24, 27, 250, 288, 1067, 1168
PleI GAGTC 3 cut(s) 381, 796, 1008
PpsI GAGTC 3 cut(s) 381, 796, 1008
PpuMI RGGWCCY 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 1281
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 6 cut(s) 259, 329, 415, 557, 568, 1191
PspFI CCCAGC 1 cut(s) 715
PspGI CCWGG 6 cut(s) 259, 329, 415, 557, 568, 1191
PspN4I GGNNCC 4 cut(s) 45, 327, 328, 1190
PspPI GGNCC 4 cut(s) 149, 326, 697, 984
PspPPI RGGWCCY 1 cut(s) 326
PstI CTGCAG 2 cut(s) 30, 288
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 2 cut(s) 43, 917
PvuII CAGCTG 2 cut(s) 25, 1166
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 669
SaqAI TTAA 8 cut(s) 102, 222, 591, 689, 711, 1044, 1173, 1278
SatI GCNGC 6 cut(s) 23, 26, 249, 287, 1066, 1167
Sau3AI GATC 4 cut(s) 43, 692, 869, 917
Sau96I GGNCC 4 cut(s) 149, 326, 697, 984
SchI GAGTC 3 cut(s) 382, 796, 1009
SexAI ACCWGGT 1 cut(s) 415
SfaNI GCATC 3 cut(s) 673, 977, 1144
SfcI CTRYAG 3 cut(s) 26, 284, 792
SinI GGWCC 3 cut(s) 149, 326, 984
SmaI CCCGGG 1 cut(s) 1075
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
Sse9I AATT 7 cut(s) 57, 232, 315, 588, 623, 686, 1202
SsiI CCGC 1 cut(s) 1034
SspMI CTAG 2 cut(s) 200, 1181
TaaI ACNGT 2 cut(s) 162, 683
TaiI ACGT 3 cut(s) 1201, 1278, 1284
TaqI TCGA 4 cut(s) 421, 705, 1079, 1206
TasI AATT 7 cut(s) 57, 232, 315, 588, 623, 686, 1202
TfiI GAWTC 3 cut(s) 629, 1051, 1220
Tru1I TTAA 8 cut(s) 102, 222, 591, 689, 711, 1044, 1173, 1278
Tru9I TTAA 8 cut(s) 102, 222, 591, 689, 711, 1044, 1173, 1278
TscAI CASTG 5 cut(s) 151, 284, 605, 618, 1066
TseI GCWGC 6 cut(s) 22, 25, 248, 286, 1065, 1166
TspDTI ATGAA 5 cut(s) 99, 621, 840, 939, 1257
TspMI CCCGGG 1 cut(s) 1073
TspRI CASTG 5 cut(s) 151, 284, 605, 618, 1066
VpaK11BI GGWCC 3 cut(s) 149, 326, 984
XapI RAATTY 1 cut(s) 1202
XceI RCATGY 1 cut(s) 1262
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XmaI CCCGGG 1 cut(s) 1073
XspI CTAG 2 cut(s) 200, 1181
Zsp2I ATGCAT 2 cut(s) 487, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.