Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Forward (+)

14167851 .. 14169285

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG081200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATATTCTTTTCTTCTTTGTTGAAGACTATTGAACTTAATTGCTTAGGTCTTAATGTCAGAGACCGGAACAGGAAGAAAGATAAGGAACTGAAAGGAATTTGGGATTTTGGAAGTGAGAGTCAGGTCCTTAAGTCCCCGTCCCCGGGGATTGGCAGCAGCCCGGCAGAGGTTTCTCCAGTTAACAAGAGGATTACTGGTCCTATTAGGCGAGCAAAGGGTGGTTGGACTCCACAGGAGGACGATACGTTGAGGAATGCAGTTGCAAAGTTTAAGGGGAAGAACTGGAAGAAAATAGCTCAATATTTTCCTGATAGATCAGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

10.0

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	73 - 108	4.4e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 107	2.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	145, 146, 152, 169
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	25, 35
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	156, 159
ApoI	RAATTY	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	127, 200
AsuC2I	CCSGG	3 cut(s)	146, 147, 164
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	127, 200
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	168, 171
BcnI	CCSGG	3 cut(s)	146, 147, 164
BcoDI	GTCTC	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	157, 160
BlsI	GCNGC	2 cut(s)	158, 161
Bme1390I	CCNGG	3 cut(s)	146, 147, 164
Bme18I	GGWCC	2 cut(s)	127, 200
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	127, 200
BmrFI	CCNGG	3 cut(s)	146, 147, 164
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	46
BpuMI	CCSGG	3 cut(s)	146, 147, 164
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	144, 145, 146
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 146, 152, 169
Bse1I	ACTGG	3 cut(s)	179, 202, 290
BseDI	CCNNGG	3 cut(s)	144, 145, 146
BseLI	CCNNNNNNNGG	4 cut(s)	145, 146, 152, 169
BseNI	ACTGG	3 cut(s)	179, 202, 290
BseXI	GCAGC	2 cut(s)	168, 171
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	67, 146, 164
BslFI	GGGAC	2 cut(s)	121, 127
BslI	CCNNNNNNNGG	4 cut(s)	145, 146, 152, 169
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	121, 127
BsmI	GAATGC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	179, 202, 290
BssECI	CCNNGG	3 cut(s)	144, 145, 146
BssMI	GATC	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	144, 145, 162
BstV1I	GCAGC	2 cut(s)	168, 171
BstV2I	GAAGAC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	127, 200
Cfr9I	CCCGGG	1 cut(s)	145
CviJI	RGCY	2 cut(s)	162, 299
CviKI_1	RGCY	2 cut(s)	162, 299
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	127, 200
Eco88I	CYCGRG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	127
FaiI	YATR	1 cut(s)	328
FaqI	GGGAC	2 cut(s)	121, 127
Fnu4HI	GCNGC	2 cut(s)	157, 160
Fsp4HI	GCNGC	2 cut(s)	157, 160
GluI	GCNGC	2 cut(s)	157, 160
GsuI	CTGGAG	1 cut(s)	162
HapII	CCGG	3 cut(s)	67, 146, 164
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	121, 229
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	3 cut(s)	67, 146, 164
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	62, 322
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	260, 266
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	248
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	317
Lsp1109I	GCAGC	2 cut(s)	168, 171
MaeII	ACGT	1 cut(s)	248
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	5 cut(s)	6, 37, 88, 292, 301
MluCI	AATT	2 cut(s)	40, 99
MlyI	GAGTC	2 cut(s)	130, 223
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	163, 183, 232, 246
MseI	TTAA	5 cut(s)	39, 54, 132, 183, 273
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	3 cut(s)	67, 146, 164
MspR9I	CCNGG	3 cut(s)	146, 147, 164
Mva1269I	GAATGC	1 cut(s)	262
NciI	CCSGG	3 cut(s)	146, 147, 164
NdeII	GATC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	158, 161
PleI	GAGTC	2 cut(s)	129, 223
PpsI	GAGTC	2 cut(s)	129, 223
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	127, 200
PspPPI	RGGWCCY	1 cut(s)	127
SaqAI	TTAA	5 cut(s)	39, 54, 132, 183, 273
SatI	GCNGC	2 cut(s)	157, 160
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	2 cut(s)	127, 200
SchI	GAGTC	2 cut(s)	130, 223
ScrFI	CCNGG	3 cut(s)	146, 147, 164
SetI	ASST	5 cut(s)	52, 129, 174, 251, 301
SinI	GGWCC	2 cut(s)	127, 200
SmaI	CCCGGG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	40, 99
SspI	AATATT	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	144, 145, 162
TaiI	ACGT	1 cut(s)	251
TasI	AATT	2 cut(s)	40, 99
Tru1I	TTAA	5 cut(s)	39, 54, 132, 183, 273
Tru9I	TTAA	5 cut(s)	39, 54, 132, 183, 273
TseI	GCWGC	2 cut(s)	156, 159
TspMI	CCCGGG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	127, 200
XapI	RAATTY	1 cut(s)	99
XmaI	CCCGGG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.