Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Forward (+)

5859491 .. 5861311

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G13960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGCTCAAGTTCGAATCCACCGGTTTGTTCACCGGAAAAGGAGGAAAGAAGTGAAATGAAGATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCCTCTGCATCCGAAGGCAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACAGTATCTTCATTTCCTCGGAGGACTAGTGGACCTATGAGACGAGCAAAAGGTGGTTGGACTCCAGAGGAGGATGAGACACTTAGACGAGCAGTTGAAAAGTATAAGGGGAAGAGGTGGAAGAAAATAGCGGAATTTTTCCCAGAGAGAACACAAGTCCAATGCTTGCACAGGTGGCAGAAAGTTCTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGGTTCTCTTATCATTTTCATGTTCTGAAACTTTTTTTGGTTTTCATTTTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

150

Amino Acids

17.06

Weight (kDa)

8.78

Isoelectric Point (pI)

81.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	308
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	74, 272
AhlI	ACTAGT	1 cut(s)	200
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	3 cut(s)	6, 101, 373
AluI	AGCT	3 cut(s)	6, 101, 373
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	208, 245
AlwNI	CAGNNNCTG	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	308
AsiGI	ACCGGT	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	206, 383
AsuHPI	GGTGA	2 cut(s)	24, 144
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	206, 383
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	208, 245
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	206, 383
BmgT120I	GGNCC	2 cut(s)	206, 383
BmsI	GCATC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	131, 378
BsaAI	YACGTR	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	191, 386
BsaWI	WCCGGW	2 cut(s)	22, 34
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse118I	RCCGGY	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	191, 386
BseGI	GGATG	2 cut(s)	119, 253
BseRI	GAGGAG	2 cut(s)	103, 257
BseXI	GCAGC	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	23, 35
BsmAI	GTCTC	2 cut(s)	208, 245
BsmBI	CGTCTC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	191, 386
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	450
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	119, 253
BstMAI	GTCTC	2 cut(s)	208, 245
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 349
BstSNI	TACGTA	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	119, 253
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	206, 383
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	1 cut(s)	417
CviJI	RGCY	4 cut(s)	6, 101, 135, 373
CviKI_1	RGCY	4 cut(s)	6, 101, 135, 373
DdeI	CTNAG	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	206, 383
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	1 cut(s)	420
FaiI	YATR	4 cut(s)	80, 212, 279, 418
FatI	CATG	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	106, 260
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	222
HapII	CCGG	2 cut(s)	23, 35
Hin1II	CATG	1 cut(s)	420
HinfI	GANTC	4 cut(s)	16, 70, 235, 391
HpaII	CCGG	2 cut(s)	23, 35
HphI	GGTGA	2 cut(s)	24, 144
Hpy166II	GTNNAC	2 cut(s)	32, 206
Hpy188I	TCNGA	3 cut(s)	124, 195, 424
Hpy188III	TCNNGA	3 cut(s)	239, 368, 395
Hpy8I	GTNNAC	2 cut(s)	32, 206
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	119, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 349
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	8 cut(s)	36, 48, 168, 183, 252, 330, 331, 381
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	150
MboII	GAAGA	5 cut(s)	73, 133, 174, 298, 307
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	229, 385
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	9 cut(s)	37, 124, 155, 189, 201, 235, 238, 282, 391
MseI	TTAA	2 cut(s)	363, 378
MslI	CAYNNNNRTG	1 cut(s)	415
MspI	CCGG	2 cut(s)	23, 35
MwoI	GCNNNNNNNGC	2 cut(s)	170, 349
NlaIII	CATG	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	16, 70
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	229, 385
PpsI	GAGTC	2 cut(s)	229, 385
Ppu21I	YACGTR	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	206, 383
PspPPI	RGGWCCY	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	415
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	363, 378
SatI	GCNGC	1 cut(s)	102
Sau96I	GGNCC	2 cut(s)	206, 383
SchI	GAGTC	2 cut(s)	229, 385
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	2 cut(s)	206, 383
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	3 cut(s)	7, 146, 393
SmoI	CTYRAG	3 cut(s)	7, 146, 393
SnaBI	TACGTA	1 cut(s)	450
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	16, 70
Tru1I	TTAA	2 cut(s)	363, 378
Tru9I	TTAA	2 cut(s)	363, 378
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	4 cut(s)	74, 174, 405, 431
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	206, 383
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.