RLG00000003835
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
53309849 .. 53312806
2958 bp
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UTR
Exon/CDS
Intron
RLM00000003835

Sequence Viewer

Length: 1416 bp
ATGGTGAAAGTCAAAAGGGAACAACTAGAGGAGGCGGTTGTGCGTTCAGACAGGAAATTTGGGGTCGAGTCATGGCCATTATCTGAAGGCAATTTTGACTCGCCTGTTTCGGAGCCAAGCCCTCTTAGTTGGAGAACCAGTGGTCCAACCAGGCGATCATCAAGATGCTGGACAGAGAAAGAGGATAAACTTCTGGTAGAGCTGGTCAGAAAGTTTAATGGGAGTAATTGGAAGCAAATTGCTGCAGGTATCCCTGGCCGTTCAGATGTTCAGTGCCTACATCGCTGGCAAAAAGTTTTGAATCCTGAAATCATCAAGGGATACTGGACAAAGGAGGAAGATGATTGTATAATCAAATTGGTTGAAAAGTATGGTGCTAGAAGATGGTCTGTCATTGCAAAGTTTTTACCAGGTCGAATAGGCAAGCAATGTAGAGAAAGGTGGTACAATCATTTAAGCCCGGCTATAAACAAAGATGCATGGACAGAAGAAGAGGAAAGAATTCTTGCTTTCTACCACCAACAGTATGGTAACAAGTGGGCAGAAATAGCAAGGTTTCTACCTGGAAGGACTGACAATGCAATTAAAAACTACTGGAATGGCGCATTCAAGAGGAAAGAAGATTCGTACTCTCCCAATGGTAATGAGTGGGACATGCATTCTGTTATCTGTATTGATGAACTAAGATCAGATTTTGTGGGGGTTAAAACAGTCAGACAGAAGTTTGATAATGCTTGTTCTACAGAGTTGACTCTTGGAAGGTCATATGGTTCAGAAGGAAAATCTGTGAAATCACAGAAATGCAGGTCTTCAAAAACAGGGCCAAGTGGTTTAATCAATTTGCACACAACGGCACAGTCCGATGACAGCATTGTTGCTACTCCTCTTGGTGTCAAAAGTGGATCTTGCAAACAAATTGCTGATCATACAGGCGAATACCGCCCTTTTCCAAACTCTCCATTGGATTTCATGGATTCATCCACTTCTACCAACTCAAACTGTACTCCTCCAAAGATTCCACTTTGCTATTCAACTCCACCCAACAGCGTGCAGAACCAGAATGTCTATGCTAGCAGCACCAGTCCAAAATCTAGATTGAAGAGCTTAGCAAGGACTTTCAAAAATACTCCTTCCATCATAAGAAAGAGAGCTTCCAGAACCACAGATCATGCCAACTTTTCTGGTGCCAGCTGCTCAACTGCATTGAACATCCTGAGTCTTGATGAAGCAGCTTTCAATAGCTTAGACTCCAACTCTTCAGACTGTGTCAGAAGTTTATCTTCAATGCGGCATAGACCTGAAACTTCAGATGCATATAAATCTCTTGGGAGGTGCCTGGAACATGAATTTGACGATGAAAATGACTCAGGTATCGCTAACTGTGGCAAAGTAGTCTCTGCATATGTTGGTGTATAA

Protein Analysis

472

Amino Acids

52.88

Weight (kDa)

8.92

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 56 - 100 7.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 57 - 114 1.1e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 106 - 152 1.7e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 109 - 166 3.7e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 158 - 200 4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 161 - 211 2.9e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 236, 795
AccB1I GGYRCC 2 cut(s) 1184, 1332
AciI CCGC 3 cut(s) 35, 940, 1288
AclWI GGATC 1 cut(s) 910
AcoI YGGCCR 2 cut(s) 74, 256
AcsI RAATTY 3 cut(s) 56, 501, 1346
AcuI CTGAAG 3 cut(s) 105, 1242, 1290
AfaI GTAC 3 cut(s) 446, 629, 1003
AjnI CCWGG 5 cut(s) 149, 253, 409, 562, 1335
AloI GAACNNNNNNTCC 2 cut(s) 127, 159
AluBI AGCT 6 cut(s) 202, 1104, 1151, 1191, 1232, 1242
AluI AGCT 6 cut(s) 202, 1104, 1151, 1191, 1232, 1242
Alw26I GTCTC 1 cut(s) 1399
AlwI GGATC 1 cut(s) 910
AoxI GGCC 3 cut(s) 74, 256, 821
ApeKI GCWGC 4 cut(s) 242, 1074, 1191, 1229
ApoI RAATTY 3 cut(s) 56, 501, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 143, 821
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 1070
AvaII GGWCC 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 1354, 1387
BalI TGGCCA 1 cut(s) 76
BanI GGYRCC 2 cut(s) 1184, 1332
BbsI GAAGAC 1 cut(s) 801
BbvI GCAGC 4 cut(s) 229, 1086, 1178, 1241
BccI CCATC 2 cut(s) 378, 1142
BceAI ACGGC 2 cut(s) 243, 867
BciT130I CCWGG 5 cut(s) 151, 255, 411, 564, 1337
BciVI GTATCC 2 cut(s) 260, 314
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 1399
BfaI CTAG 4 cut(s) 26, 378, 1071, 1092
BfmI CTRYAG 2 cut(s) 243, 741
BfuAI ACCTGC 2 cut(s) 236, 795
BfuI GTATCC 2 cut(s) 260, 314
BisI GCNGC 5 cut(s) 243, 1075, 1192, 1230, 1289
BlpI GCTNAGC 1 cut(s) 1105
BlsI GCNGC 5 cut(s) 244, 1076, 1193, 1231, 1290
Bme1390I CCNGG 6 cut(s) 151, 255, 411, 461, 564, 1337
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 143, 821
BmiI GGNNCC 3 cut(s) 114, 1186, 1334
BmrFI CCNGG 6 cut(s) 151, 255, 411, 461, 564, 1337
BmsI GCATC 3 cut(s) 155, 466, 1300
BmtI GCTAGC 1 cut(s) 1074
BpiI GAAGAC 1 cut(s) 801
Bpu1102I GCTNAGC 1 cut(s) 1105
BpuMI CCSGG 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bse1I ACTGG 4 cut(s) 138, 329, 599, 1080
Bse3DI GCAATG 2 cut(s) 393, 434
BseBI CCWGG 5 cut(s) 151, 255, 411, 564, 1337
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 977, 1209
BseMI GCAATG 2 cut(s) 393, 434
BseMII CTCAG 2 cut(s) 1205, 1380
BseNI ACTGG 4 cut(s) 138, 329, 599, 1080
BseRI GAGGAG 3 cut(s) 44, 873, 996
BseXI GCAGC 4 cut(s) 229, 1086, 1178, 1241
BsgI GTGCAG 1 cut(s) 1070
BshFI GGCC 3 cut(s) 76, 258, 823
BshNI GGYRCC 2 cut(s) 1184, 1332
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 665
BsmAI GTCTC 1 cut(s) 1399
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 2 cut(s) 605, 658
BsnI GGCC 3 cut(s) 76, 258, 823
Bsp143I GATC 5 cut(s) 155, 686, 902, 922, 1165
Bsp1720I GCTNAGC 1 cut(s) 1105
BspACI CCGC 3 cut(s) 35, 940, 1288
BspANI GGCC 3 cut(s) 76, 258, 823
BspCNI CTCAG 2 cut(s) 1206, 1379
BspLI GGNNCC 3 cut(s) 114, 1186, 1334
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 2 cut(s) 236, 795
BspOI GCTAGC 1 cut(s) 1074
BspPI GGATC 1 cut(s) 910
BspQI GCTCTTC 1 cut(s) 1094
BspT107I GGYRCC 2 cut(s) 1184, 1332
BsrDI GCAATG 2 cut(s) 393, 434
BsrI ACTGG 4 cut(s) 138, 329, 599, 1080
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 5 cut(s) 155, 686, 902, 922, 1165
Bst2UI CCWGG 5 cut(s) 151, 255, 411, 564, 1337
Bst4CI ACNGT 6 cut(s) 525, 712, 858, 1001, 1265, 1382
Bst6I CTCTTC 3 cut(s) 486, 1094, 1261
BstC8I GCNNGC 5 cut(s) 287, 425, 1049, 1072, 1189
BstDEI CTNAG 6 cut(s) 125, 683, 1105, 1214, 1243, 1366
BstF5I GGATG 2 cut(s) 977, 1209
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 5 cut(s) 158, 689, 905, 925, 1168
BstMAI GTCTC 1 cut(s) 1399
BstMBI GATC 5 cut(s) 155, 686, 902, 922, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 282, 548, 939
BstNI CCWGG 5 cut(s) 151, 255, 411, 564, 1337
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 6 cut(s) 149, 253, 409, 459, 562, 1335
BstSFI CTRYAG 2 cut(s) 243, 741
BstV1I GCAGC 4 cut(s) 229, 1086, 1178, 1241
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 1 cut(s) 902
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 1 cut(s) 902
BsuI GTATCC 2 cut(s) 260, 314
BsuRI GGCC 3 cut(s) 76, 258, 823
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 977, 1209
BtsIMutI CAGTG 2 cut(s) 145, 278
BveI ACCTGC 2 cut(s) 236, 795
Cac8I GCNNGC 5 cut(s) 287, 425, 1049, 1072, 1189
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 143, 821
CsiI ACCWGGT 1 cut(s) 409
Csp6I GTAC 3 cut(s) 445, 628, 1002
CviAII CATG 6 cut(s) 72, 480, 655, 970, 1169, 1343
CviQI GTAC 3 cut(s) 445, 628, 1002
DdeI CTNAG 6 cut(s) 125, 683, 1105, 1214, 1243, 1366
DpnI GATC 5 cut(s) 157, 688, 904, 924, 1167
DpnII GATC 5 cut(s) 155, 686, 902, 922, 1165
EaeI YGGCCR 2 cut(s) 74, 256
Eam1104I CTCTTC 3 cut(s) 486, 1094, 1261
EarI CTCTTC 3 cut(s) 486, 1094, 1261
Eco47I GGWCC 1 cut(s) 143
Eco57I CTGAAG 3 cut(s) 105, 1242, 1290
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 5 cut(s) 149, 253, 409, 562, 1335
EcoT22I ATGCAT 3 cut(s) 481, 660, 1315
FaeI CATG 6 cut(s) 75, 483, 658, 973, 1172, 1346
FalI AAGNNNNNCTT 4 cut(s) 889, 921, 1264, 1296
FaqI GGGAC 1 cut(s) 665
FatI CATG 6 cut(s) 71, 479, 654, 969, 1168, 1342
FauNDI CATATG 2 cut(s) 766, 1402
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 5 cut(s) 243, 1075, 1192, 1230, 1289
FokI GGATG 2 cut(s) 964, 1196
Fsp4HI GCNGC 5 cut(s) 243, 1075, 1192, 1230, 1289
FspBI CTAG 4 cut(s) 26, 378, 1071, 1092
GlaI GCGC 1 cut(s) 604
GluI GCNGC 5 cut(s) 243, 1075, 1192, 1230, 1289
HaeIII GGCC 3 cut(s) 76, 258, 823
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 605
Hin1II CATG 6 cut(s) 75, 483, 658, 973, 1172, 1346
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 750
Hpy188III TCNNGA 7 cut(s) 162, 305, 610, 1092, 1155, 1213, 1220
Hpy8I GTNNAC 1 cut(s) 750
HpyAV CCTTC 5 cut(s) 80, 561, 753, 770, 1140
HpyCH4III ACNGT 6 cut(s) 525, 712, 858, 1001, 1265, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 548, 939
HpyF3I CTNAG 6 cut(s) 125, 683, 1105, 1214, 1243, 1366
Hsp92II CATG 6 cut(s) 75, 483, 658, 973, 1172, 1346
HspAI GCGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 155, 686, 902, 922, 1165
LguI GCTCTTC 1 cut(s) 1094
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 4 cut(s) 229, 1086, 1178, 1241
LweI GCATC 3 cut(s) 155, 466, 1300
MabI ACCWGGT 1 cut(s) 409
MaeI CTAG 4 cut(s) 26, 378, 1071, 1092
MaeIII GTNAC 1 cut(s) 530
MalI GATC 5 cut(s) 157, 688, 904, 924, 1167
MboI GATC 5 cut(s) 155, 686, 902, 922, 1165
MboII GAAGA 9 cut(s) 350, 393, 500, 503, 632, 801, 1111, 1248, 1272
MflI RGATCY 1 cut(s) 902
MlsI TGGCCA 1 cut(s) 76
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 6 cut(s) 77, 92, 745, 1225, 1241, 1358
MmeI TCCRAC 3 cut(s) 110, 170, 1275
Mox20I TGGCCA 1 cut(s) 76
Mph1103I ATGCAT 3 cut(s) 481, 660, 1315
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 76
MseI TTAA 5 cut(s) 216, 455, 585, 705, 833
MslI CAYNNNNRTG 2 cut(s) 163, 799
Msp20I TGGCCA 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 1191
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 6 cut(s) 151, 255, 411, 461, 564, 1337
Mva1269I GAATGC 2 cut(s) 605, 658
MvaI CCWGG 5 cut(s) 151, 255, 411, 564, 1337
MwoI GCNNNNNNNGC 3 cut(s) 282, 548, 939
NciI CCSGG 1 cut(s) 461
NdeI CATATG 2 cut(s) 766, 1402
NdeII GATC 5 cut(s) 155, 686, 902, 922, 1165
NheI GCTAGC 1 cut(s) 1070
NlaIII CATG 6 cut(s) 75, 483, 658, 973, 1172, 1346
NlaIV GGNNCC 3 cut(s) 114, 1186, 1334
NsiI ATGCAT 3 cut(s) 481, 660, 1315
NspI RCATGY 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 1094
PctI GAATGC 2 cut(s) 605, 658
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 301, 623, 974, 1015
PflFI GACNNNGTC 1 cut(s) 1265
PkrI GCNGC 5 cut(s) 244, 1076, 1193, 1231, 1290
PleI GAGTC 6 cut(s) 76, 92, 745, 1224, 1241, 1358
PpsI GAGTC 6 cut(s) 76, 92, 745, 1224, 1241, 1358
Psp6I CCWGG 5 cut(s) 149, 253, 409, 562, 1335
PspGI CCWGG 5 cut(s) 149, 253, 409, 562, 1335
PspN4I GGNNCC 3 cut(s) 114, 1186, 1334
PspPI GGNCC 2 cut(s) 143, 821
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 902
PsyI GACNNNGTC 1 cut(s) 1265
PvuII CAGCTG 1 cut(s) 1191
RsaI GTAC 3 cut(s) 446, 629, 1003
RsaNI GTAC 3 cut(s) 445, 628, 1002
RseI CAYNNNNRTG 2 cut(s) 163, 799
SapI GCTCTTC 1 cut(s) 1094
SaqAI TTAA 5 cut(s) 216, 455, 585, 705, 833
SatI GCNGC 5 cut(s) 243, 1075, 1192, 1230, 1289
Sau3AI GATC 5 cut(s) 155, 686, 902, 922, 1165
Sau96I GGNCC 2 cut(s) 143, 821
SchI GAGTC 6 cut(s) 77, 92, 745, 1225, 1241, 1358
ScrFI CCNGG 6 cut(s) 151, 255, 411, 461, 564, 1337
SexAI ACCWGGT 1 cut(s) 409
SfaNI GCATC 3 cut(s) 155, 466, 1300
SfcI CTRYAG 2 cut(s) 243, 741
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 163, 799
SsiI CCGC 3 cut(s) 35, 940, 1288
SspMI CTAG 4 cut(s) 26, 378, 1071, 1092
StyD4I CCNGG 6 cut(s) 149, 253, 409, 459, 562, 1335
TaaI ACNGT 6 cut(s) 525, 712, 858, 1001, 1265, 1382
TaqI TCGA 2 cut(s) 66, 415
TatI WGTACW 1 cut(s) 1001
TauI GCSGC 1 cut(s) 1291
TfiI GAWTC 4 cut(s) 301, 623, 974, 1015
Tru1I TTAA 5 cut(s) 216, 455, 585, 705, 833
Tru9I TTAA 5 cut(s) 216, 455, 585, 705, 833
TscAI CASTG 2 cut(s) 145, 278
TseI GCWGC 4 cut(s) 242, 1074, 1191, 1229
TspDTI ATGAA 6 cut(s) 693, 958, 966, 1239, 1359, 1371
TspRI CASTG 2 cut(s) 145, 278
Tth111I GACNNNGTC 1 cut(s) 1265
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 3 cut(s) 56, 501, 1346
XbaI TCTAGA 1 cut(s) 1091
XceI RCATGY 1 cut(s) 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 4 cut(s) 26, 378, 1071, 1092
Zsp2I ATGCAT 3 cut(s) 481, 660, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.