Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Forward (+)

5683899 .. 5685065

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACGAAAATCAATAGGAAGCATCCAGAGGATGCCGGTATCGGTTCACACGAGAAAATGGGTTTCCTTTTTCAAGCATTATATGAAGCTGAATACTGTTCAGATTCCCCCTTTCCGAAGCCAAGCTCAATTCACTGGAGAACCACTGGTCCAACAAGACGGTCAGCAAAAAGCTGGACAGCGGAAGAGGATAATCTTCTAGGAGAGTTAGTCACAAAGTTCAACAGGAGCAGTTGGAAGAAAATAGCTGCAGGTCTCCCGGGGCGCACAGATATTCAGTGCCTGCAACGCTGGAAAAAGGTTTTAAATCCAGAAGTCGTCAAGGGAGCCTGGACAAAGGAGTTCAGGAAGATGATTGCATTATCAAGCAAGTCGAAAAACATGGTGCCAAAAGATGGTCTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04151 ko05166 map04151 map05166

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

136

Amino Acids

15.35

Weight (kDa)

9.82

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	74, 223
AjnI	CCWGG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	133, 165
AluBI	AGCT	4 cut(s)	89, 126, 174, 248
AluI	AGCT	4 cut(s)	89, 126, 174, 248
Alw26I	GTCTC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	2 cut(s)	260, 261
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	385
BauI	CACGAG	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	260, 261
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	3 cut(s)	260, 261, 331
Bme18I	GGWCC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	328, 387
BmrFI	CCNGG	3 cut(s)	260, 261, 331
BmsI	GCATC	2 cut(s)	22, 31
BpmI	CTGGAG	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	260, 261
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	259, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	140, 151
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	259, 260
BseGI	GGATG	2 cut(s)	22, 37
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	140, 151
BseXI	GCAGC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	36, 260
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	259
BspACI	CCGC	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	328, 387
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	140, 151
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	259, 260
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	98, 162
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	22, 37
BstHHI	GCGC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	3 cut(s)	258, 259, 329
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	22, 37
BtsIMutI	CAGTG	3 cut(s)	133, 144, 284
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	149
Cfr9I	CCCGGG	1 cut(s)	259
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	6 cut(s)	89, 121, 126, 174, 248, 329
CviKI_1	RGCY	6 cut(s)	89, 121, 126, 174, 248, 329
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	329
FaeI	CATG	1 cut(s)	385
FaiI	YATR	4 cut(s)	82, 84, 383, 406
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	9, 44
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	157
HapII	CCGG	2 cut(s)	36, 260
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	2 cut(s)	36, 260
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	103, 117
Hpy188III	TCNNGA	3 cut(s)	26, 311, 346
Hpy8I	GTNNAC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	98, 162
HpyCH4V	TGCA	3 cut(s)	251, 286, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	228, 326
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	22, 31
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	188, 197, 250, 361
MluCI	AATT	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	176, 215
MnlI	CCTC	2 cut(s)	22, 181
MseI	TTAA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	36, 260
MspR9I	CCNGG	3 cut(s)	260, 261, 331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	2 cut(s)	260, 261
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	328, 387
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	328, 387
PspPI	GGNCC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	260, 261, 331
SetI	ASST	6 cut(s)	91, 128, 176, 250, 256, 303
SfaNI	GCATC	2 cut(s)	22, 31
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	149
SmaI	CCCGGG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	3 cut(s)	258, 259, 329
TaaI	ACNGT	2 cut(s)	98, 162
TaqI	TCGA	1 cut(s)	374
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	3 cut(s)	140, 151, 284
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	99
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	3 cut(s)	140, 151, 284
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	259
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.