Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004605

Physical Location & Seq

Genomic Coordinates Forward (+)

11243673 .. 11249369

Gene Structure 5697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTGGGGAGAAGCGAAGTTCCAATAGAGGAGTGTTGCCTTGTGAATAAGCAATCCACGGCTGCGTCGAGCTCGGATTCCGAAGGAAGTGAGAGTCCTATCCTTAAGTCCCCGTCCTCGGGGATTGGCAGCAGCCCGGCAGAGGCTTCTTCAGTTAACAAGAGGATTACTGGTCCTATTAGGCGAGCAAAGGGTGGTTGGACTCCACAGGAGGACGATACATTGAGGAATGCAGTTGCAAAGTTTAAGGGGAAGAATTGGAAGAAAATAGTCATGACAAAGGAAGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

97

Amino Acids

10.39

Weight (kDa)

9.26

Isoelectric Point (pI)

93.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	64 - 90	2.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13960 AT2G13960 AT2G13960 AT3G09370 AT3G09370 AT3G09370
fragaria_vesca	FvH4_5g01790
malus_domestica	MD04G1064500.v1.1 MD08G1117700.v1.1
prunus_persica	Prupe.5G093400_v2.0.a1 Prupe.5G093400_v2.0.a1
pyrus_communis	pycom04g05830
rosa_chinensis	RchiOBHm_Chr7g0198881
rosa_laevigata	RLG00000003835 RLG00000003838
rosa_multiflora	Rmu_sc0016854.1_g000006
rosa_roxburghii	Rroxscaffold_3G00257330 Rroxscaffold_3G00257350
rosa_rugosa	Rorug07G0050200 Rorug07G0050300 Rorug07G0050400
rosa_samantha	Rh4BG081200 Rh4DG076200 Rh7AG173800 Rh7AG174200 Rh7BG177200 Rh7CG183300 Rh7DG176500 Rh7DG176700
rosa_wichuraiana	Rw7G015220 Rw7G015250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	118, 119, 142
AflII	CTTAAG	1 cut(s)	104
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	62, 129, 132
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	49, 141, 144
BceAI	ACGGC	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	137
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	3 cut(s)	63, 130, 133
BlsI	GCNGC	3 cut(s)	64, 131, 134
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	57, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 119, 142
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	57, 117
BseLI	CCNNNNNNNGG	3 cut(s)	118, 119, 142
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	49, 141, 144
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	118, 119, 142
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	57, 117
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	49, 141, 144
BtgI	CCRYGG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	173
CseI	GACGC	1 cut(s)	54
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	4 cut(s)	62, 72, 135, 146
CviKI_1	RGCY	4 cut(s)	62, 72, 135, 146
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	1 cut(s)	277
FaiI	YATR	1 cut(s)	275
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	63, 130, 133
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	63, 130, 133
GluI	GCNGC	3 cut(s)	63, 130, 133
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	3 cut(s)	77, 94, 202
HpaI	GTTAAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	76, 82
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	233, 239
Hsp92II	CATG	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	157
LpnPI	CCDG	3 cut(s)	150, 156, 194
Lsp1109I	GCAGC	3 cut(s)	49, 141, 144
MboII	GAAGA	3 cut(s)	141, 265, 274
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	2 cut(s)	103, 196
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	6 cut(s)	22, 127, 136, 156, 205, 219
MseI	TTAA	3 cut(s)	105, 156, 246
MspCI	CTTAAG	1 cut(s)	104
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	137
NlaIII	CATG	1 cut(s)	277
PagI	TCATGA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	64, 131, 134
PleI	GAGTC	2 cut(s)	102, 196
PpsI	GAGTC	2 cut(s)	102, 196
Psp124BI	GAGCTC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	105, 156, 246
SatI	GCNGC	3 cut(s)	63, 130, 133
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	103, 196
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	1 cut(s)	74
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	256
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	105, 156, 246
Tru9I	TTAA	3 cut(s)	105, 156, 246
TseI	GCWGC	3 cut(s)	62, 129, 132
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.