Rh7DG373800
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012704
Physical Location & Seq
Forward (+)
50675779 .. 50676109
331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG373800.1

Sequence Viewer

Length: 240 bp
ATGGTCGACAAGCTCTGCAAGCTCCGAGTCGAGGAGCTCCAGCGCGAGGTCCGCCATTGCGACGTTTCTATCGTGTCGTTGGAGCTTACGGTGAAGAGGATGGATGAGGAGGACAGAGACCGAAGCTTGAAGGTGGCAGAGGCGGAGCAGCCGGCTCAGGCCTCGTCTATTTTTCTACATGTGCATGGTTTACAGTTGCTAATTCGTTTCGTTTTGATTACCGAGTCTTCGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

79

Amino Acids

9.12

Weight (kDa)

5.31

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 52, 143
AfiI CCNNNNNNNGG 2 cut(s) 31, 46
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 5 cut(s) 13, 22, 37, 85, 126
AluI AGCT 5 cut(s) 13, 22, 37, 85, 126
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 46
Bse118I RCCGGY 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 55
BseGI GGATG 2 cut(s) 105, 109
BseLI CCNNNNNNNGG 2 cut(s) 31, 46
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 47, 122
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 31, 46
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 2 cut(s) 52, 143
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 91, 195
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 20, 153
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 105, 109
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 19, 51
BstNSI RCATGY 1 cut(s) 182
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 105, 109
Cac8I GCNNGC 2 cut(s) 20, 153
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 2 cut(s) 179, 185
CviJI RGCY 8 cut(s) 13, 22, 37, 85, 126, 151, 155, 161
CviKI_1 RGCY 8 cut(s) 13, 22, 37, 85, 126, 151, 155, 161
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 2 cut(s) 41, 158
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 182, 188
FaiI YATR 2 cut(s) 180, 186
FatI CATG 2 cut(s) 178, 184
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 2 cut(s) 112, 116
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 149
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 45
Hin1II CATG 2 cut(s) 182, 188
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 2 cut(s) 27, 224
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 7, 191
Hpy188I TCNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 7, 191
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 91, 195
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 18, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 51
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 182, 188
HspAI GCGC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
LmnI GCTCC 5 cut(s) 27, 34, 42, 82, 145
LpnPI CCDG 3 cut(s) 53, 143, 165
Lsp1109I GCAGC 1 cut(s) 160
MaeII ACGT 1 cut(s) 63
MboII GAAGA 2 cut(s) 106, 219
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 201
MlyI GAGTC 2 cut(s) 36, 233
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 7 cut(s) 25, 40, 90, 100, 103, 133, 172
MroNI GCCGGC 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 19, 51
NaeI GCCGGC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 182, 188
NspI RCATGY 1 cut(s) 182
PceI AGGCCT 1 cut(s) 161
PciI ACATGT 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 2 cut(s) 35, 232
PpsI GAGTC 2 cut(s) 35, 232
PscI ACATGT 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 36, 233
SduI GDGCHC 1 cut(s) 39
SetI ASST 8 cut(s) 15, 24, 39, 51, 66, 87, 128, 135
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 1 cut(s) 201
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 2 cut(s) 52, 143
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 161
TaaI ACNGT 2 cut(s) 91, 195
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 6, 30, 230
TaqII GACCGA 1 cut(s) 135
TasI AATT 1 cut(s) 201
TseI GCWGC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 49
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.