Rh1AG128600
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012704
Physical Location & Seq
Forward (+)
24179525 .. 24179865
341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG128600.1

Sequence Viewer

Length: 195 bp
ATGGTCGACAAGCTCTGCAGGCTCCGAGTCCAGGAGCTCCGACGCAAGTTCCGCCGTTACGACGTTTCGATCGTGTCGTTGGAGCTGAAGGTGAAGATGATAGAGGAGGAGGACAGAGACCGGAGCTTGAAGGCGGCGGAGGCTGAGCAGCCGGCTCAGGCCTCGTCTCTTTTCTACATGTGCAGGGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

64

Amino Acids

7.68

Weight (kDa)

8.71

Isoelectric Point (pI)

82.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AciI CCGC 3 cut(s) 52, 134, 137
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 4 cut(s) 13, 37, 85, 126
AluI AGCT 4 cut(s) 13, 37, 85, 126
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 111, 171
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 103
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 111, 171
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 2 cut(s) 135, 149
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 2 cut(s) 136, 150
Bme1390I CCNGG 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 151
BseBI CCWGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 135, 170
BseRI GAGGAG 2 cut(s) 119, 122
BseXI GCAGC 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 121, 152
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 111, 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 3 cut(s) 52, 134, 137
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 136, 169
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 20, 153
BstDEI CTNAG 2 cut(s) 144, 156
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 111, 171
BstMBI GATC 1 cut(s) 69
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 19, 51, 140
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 20, 153
Cfr10I RCCGGY 1 cut(s) 151
CseI GACGC 1 cut(s) 51
CviAII CATG 1 cut(s) 178
CviJI RGCY 9 cut(s) 13, 22, 37, 85, 126, 143, 151, 155, 161
CviKI_1 RGCY 9 cut(s) 13, 22, 37, 85, 126, 143, 151, 155, 161
DdeI CTNAG 2 cut(s) 144, 156
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
EciI GGCGGA 2 cut(s) 41, 152
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 179, 191
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 135, 149
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 135, 149
GluI GCNGC 2 cut(s) 135, 149
HaeIII GGCC 1 cut(s) 161
HapII CCGG 2 cut(s) 121, 152
HgaI GACGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 27
HpaII CCGG 2 cut(s) 121, 152
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 26, 41
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 2 cut(s) 45, 65
HpyAV CCTTC 2 cut(s) 82, 124
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 18, 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 51, 140
HpyF3I CTNAG 2 cut(s) 144, 156
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 181
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 69
LmnI GCTCC 5 cut(s) 27, 34, 42, 82, 123
LpnPI CCDG 7 cut(s) 4, 17, 44, 134, 143, 165, 169
Lsp1109I GCAGC 1 cut(s) 160
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 39
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 60, 64
MnlI CCTC 5 cut(s) 97, 100, 103, 133, 172
MroNI GCCGGC 1 cut(s) 151
MspI CCGG 2 cut(s) 121, 152
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 19, 51, 140
NaeI GCCGGC 1 cut(s) 153
NdeII GATC 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 23
NspI RCATGY 1 cut(s) 181
PceI AGGCCT 1 cut(s) 161
PciI ACATGT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 74
PdiI GCCGGC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 2 cut(s) 136, 150
Ple19I CGATCG 1 cut(s) 72
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PscI ACATGT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 20
PvuI CGATCG 1 cut(s) 72
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 5
SatI GCNGC 2 cut(s) 135, 149
Sau3AI GATC 1 cut(s) 69
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 39
SetI ASST 6 cut(s) 15, 39, 66, 87, 93, 128
SfcI CTRYAG 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 3 cut(s) 52, 134, 137
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 30
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 6, 68
TauI GCSGC 1 cut(s) 137
TseI GCWGC 1 cut(s) 148
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.