Rh3BG232200
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012704
Physical Location & Seq
Reverse (-)
21516944 .. 21517250
307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG232200.1

Sequence Viewer

Length: 195 bp
ATGGTCGACAAGCTCCGCAGGCTCCTAGTCGAGGAGCTCCGGCGTGAGGTCCGCAGTTGCGACGTTACGATTGTGTCGTTGGAGCTGAAGGTGAAGAGGATGGAGGAGGAGGACAGAGACCAAAGCTTGAAGGCGGCGGAGGAGGAGCAGTCGGCTCAGGCCTCGTCTCTTTTTCTACATGTGCAGGGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

64

Amino Acids

7.42

Weight (kDa)

5.11

Isoelectric Point (pI)

88.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AciI CCGC 4 cut(s) 16, 52, 134, 137
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 31, 46
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 4 cut(s) 13, 37, 85, 126
AluI AGCT 4 cut(s) 13, 37, 85, 126
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 111, 171
AoxI GGCC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 2 cut(s) 39, 191
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 111, 171
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 46
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 31, 46
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 5 cut(s) 47, 119, 122, 155, 158
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 31, 46
BsmAI GTCTC 2 cut(s) 111, 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 39, 191
BspACI CCGC 4 cut(s) 16, 52, 134, 137
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 111, 171
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 1 cut(s) 179
CviJI RGCY 8 cut(s) 13, 22, 37, 85, 126, 155, 161, 189
CviKI_1 RGCY 8 cut(s) 13, 22, 37, 85, 126, 155, 161, 189
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 2 cut(s) 39, 191
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoT38I GRGCYC 2 cut(s) 39, 191
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 1 cut(s) 182
FaiI YATR 2 cut(s) 180, 193
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 2 cut(s) 39, 191
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 40
Hin1II CATG 1 cut(s) 182
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 124
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 82, 124
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 182
LmnI GCTCC 6 cut(s) 18, 27, 34, 42, 82, 145
LpnPI CCDG 4 cut(s) 4, 53, 143, 170
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 39, 191
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 9 cut(s) 25, 40, 90, 97, 100, 103, 133, 136, 172
MspI CCGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 19
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 23
NspI RCATGY 1 cut(s) 182
PceI AGGCCT 1 cut(s) 161
PciI ACATGT 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PkrI GCNGC 1 cut(s) 136
PscI ACATGT 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 49
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 49
SduI GDGCHC 2 cut(s) 39, 191
SetI ASST 7 cut(s) 15, 39, 51, 66, 87, 93, 128
SinI GGWCC 1 cut(s) 49
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 4 cut(s) 16, 52, 134, 137
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 161
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 6, 30
TauI GCSGC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 29
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.