Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012704

Physical Location & Seq

Genomic Coordinates Reverse (-)

9358273 .. 9360104

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG102500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGACTAGAATTCTTGGTAGCAGAGATTCTTGAGGCAAATAGCTGCGGCCCTCACCCGTTCGACTTTCTATTTGCTGATCAGGACACCTCCACGTCGTCGCTGCTGCAGGCGAAGGCGCCGCTCGACTCGCACCCGGAGGTTCTGCCCAAGGCCCGGGAAGAGGTCGCCGGAGTTTGGGACCAGGAGTCGGAGGAGCTGATCACGGCGGACCAGCTGGCGCGGATGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000249 GO:0003674 GO:0003824 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0044238 GO:0055114 GO:0070704 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

77

Amino Acids

8.46

Weight (kDa)

4.13

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012704)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003511.1_g000020 Rmu_sc0005098.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109960 Rroxscaffold_7G00157020
rosa_samantha	Rh1AG128600 Rh1CG007100 Rh1CG122400 Rh3AG173000 Rh3BG232200 Rh3CG189600 Rh3CG338500 Rh3DG340400 Rh3DG340500 Rh4BG200500 Rh5BG183400 Rh5CG165500 Rh5DG102500 Rh6CG038400 Rh7DG373800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	223
AciI	CCGC	4 cut(s)	48, 122, 209, 223
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	156, 163, 177, 190
AhdI	GACNNNNNGTC	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	45, 199, 217
AluI	AGCT	3 cut(s)	45, 199, 217
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	2 cut(s)	49, 153
ApeKI	GCWGC	3 cut(s)	45, 103, 106
ApoI	RAATTY	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	2 cut(s)	121, 223
AspS9I	GGNCC	4 cut(s)	50, 154, 181, 211
AsuC2I	CCSGG	3 cut(s)	137, 157, 158
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	156
AvaII	GGWCC	2 cut(s)	181, 211
BanI	GGYRCC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	32, 90, 93
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	2 cut(s)	79, 201
BcnI	CCSGG	3 cut(s)	137, 157, 158
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	5 cut(s)	46, 49, 104, 107, 122
BlsI	GCNGC	5 cut(s)	47, 50, 105, 108, 123
Bme1390I	CCNGG	4 cut(s)	137, 157, 158, 185
Bme18I	GGWCC	2 cut(s)	181, 211
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	4 cut(s)	50, 154, 181, 211
BmiI	GGNNCC	2 cut(s)	120, 182
BmrFI	CCNGG	4 cut(s)	137, 157, 158, 185
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	3 cut(s)	137, 157, 158
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	150, 156
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 163, 177, 190
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	150, 156
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	4 cut(s)	156, 163, 177, 190
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	32, 90, 93
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	51, 155
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	137, 157, 171
BslFI	GGGAC	2 cut(s)	18, 194
BslI	CCNNNNNNNGG	4 cut(s)	156, 163, 177, 190
BsmFI	GGGAC	2 cut(s)	18, 194
BsnI	GGCC	2 cut(s)	51, 155
BsoBI	CYCGRG	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	79, 201
BspACI	CCGC	4 cut(s)	48, 122, 209, 223
BspANI	GGCC	2 cut(s)	51, 155
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	120, 182
BspMAI	CTGCAG	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	150, 156
BssMI	GATC	2 cut(s)	79, 201
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	111, 219
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	121, 223
BstKTI	GATC	2 cut(s)	82, 204
BstMBI	GATC	2 cut(s)	79, 201
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	4 cut(s)	135, 155, 156, 183
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	32, 90, 93
BsuRI	GGCC	2 cut(s)	51, 155
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	111, 219
CfoI	GCGC	2 cut(s)	121, 223
Cfr13I	GGNCC	4 cut(s)	50, 154, 181, 211
Cfr9I	CCCGGG	1 cut(s)	156
CviJI	RGCY	5 cut(s)	45, 51, 155, 199, 217
CviKI_1	RGCY	5 cut(s)	45, 51, 155, 199, 217
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	81, 203
DpnII	GATC	2 cut(s)	79, 201
DriI	GACNNNNNGTC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	181, 211
Eco88I	CYCGRG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	150
FaqI	GGGAC	2 cut(s)	18, 194
FbaI	TGATCA	2 cut(s)	79, 201
Fnu4HI	GCNGC	5 cut(s)	46, 49, 104, 107, 122
Fsp4HI	GCNGC	5 cut(s)	46, 49, 104, 107, 122
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	120, 222
GluI	GCNGC	5 cut(s)	46, 49, 104, 107, 122
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	51, 155
HapII	CCGG	3 cut(s)	137, 157, 171
HhaI	GCGC	2 cut(s)	121, 223
Hin1I	GRCGYC	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	119, 221
HinP1I	GCGC	2 cut(s)	119, 221
HinfI	GANTC	3 cut(s)	28, 128, 188
HpaII	CCGG	3 cut(s)	137, 157, 171
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	32, 83
Hpy99I	CGWCG	2 cut(s)	100, 103
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	95, 230
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpySE526I	ACGT	2 cut(s)	95, 230
Hsp92I	GRCGYC	1 cut(s)	119
HspAI	GCGC	2 cut(s)	119, 221
KasI	GGCGCC	1 cut(s)	118
Ksp22I	TGATCA	2 cut(s)	79, 201
Kzo9I	GATC	2 cut(s)	79, 201
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	9 cut(s)	68, 95, 150, 170, 170, 184, 197, 203, 227
Lsp1109I	GCAGC	3 cut(s)	32, 90, 93
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	2 cut(s)	95, 230
MalI	GATC	2 cut(s)	81, 203
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	2 cut(s)	79, 201
MboII	GAAGA	1 cut(s)	173
MluCI	AATT	1 cut(s)	11
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	122, 197
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	28, 63, 100, 133, 157, 187
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	137, 157, 171
MspR9I	CCNGG	4 cut(s)	137, 157, 158, 185
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	3 cut(s)	137, 157, 158
NdeII	GATC	2 cut(s)	79, 201
NlaIV	GGNNCC	2 cut(s)	120, 182
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	47, 50, 105, 108, 123
PleI	GAGTC	2 cut(s)	122, 196
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	2 cut(s)	122, 196
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	120, 182
PspPI	GGNCC	4 cut(s)	50, 154, 181, 211
PstI	CTGCAG	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	217
SatI	GCNGC	5 cut(s)	46, 49, 104, 107, 122
Sau3AI	GATC	2 cut(s)	79, 201
Sau96I	GGNCC	4 cut(s)	50, 154, 181, 211
SchI	GAGTC	2 cut(s)	122, 197
ScrFI	CCNGG	4 cut(s)	137, 157, 158, 185
SetI	ASST	8 cut(s)	47, 92, 98, 144, 168, 201, 219, 233
SfcI	CTRYAG	1 cut(s)	107
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	2 cut(s)	181, 211
SmaI	CCCGGG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	4 cut(s)	48, 122, 209, 223
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	4 cut(s)	135, 155, 156, 183
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	2 cut(s)	98, 233
TaqI	TCGA	2 cut(s)	63, 126
TasI	AATT	1 cut(s)	11
TauI	GCSGC	2 cut(s)	51, 124
TfiI	GAWTC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	45, 103, 106
TspMI	CCCGGG	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	181, 211
XapI	RAATTY	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	156
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.