Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005098.1

Orthogroup ID

OG0012704

Physical Location & Seq

Genomic Coordinates Forward (+)

53768 .. 54793

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005098.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggaagagagagaaaccataggagacttcgccgaagcccgtcaccggccgcccgattcggatcaccggtcgccggaatccggtcaccggaatccagtcaccggcagccggattccggccaactttctcaggaatccgggcattctgcaccattttacccaaaaaagaaaaaacagagaattgattgagtcacccaatgaaaagctctgggcacccatgtcctcttctccacctgttgcagtcggagtcgacttcttcttctttctatttgctgctcaagacgcctccacgtcgtcattactgtgggccatggcgtcgctcgactcacacccggagattctagccaaggtccgggaactgatcacggcggaccagctaacgtggatgagttttccgagaagtgatttcgacgagtacgctgacgcatatccagtgagagggataacagcgagtgccggaatgataacagcaacgacggcaaggctgcggaggctcgggatcggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000249 GO:0003674 GO:0003824 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0044238 GO:0055114 GO:0070704 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

168

Amino Acids

18.78

Weight (kDa)

6.3

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012704)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003511.1_g000020 Rmu_sc0005098.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109960 Rroxscaffold_7G00157020
rosa_samantha	Rh1AG128600 Rh1CG007100 Rh1CG122400 Rh3AG173000 Rh3BG232200 Rh3CG189600 Rh3CG338500 Rh3DG340400 Rh3DG340500 Rh4BG200500 Rh5BG183400 Rh5CG165500 Rh5DG102500 Rh6CG038400 Rh7DG373800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	3 cut(s)	50, 368, 487
AclWI	GGATC	2 cut(s)	69, 506
AcoI	YGGCCR	2 cut(s)	47, 117
AcyI	GRCGYC	2 cut(s)	282, 314
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	9 cut(s)	45, 73, 80, 87, 101, 108, 115, 351, 437
AgeI	ACCGGT	1 cut(s)	66
AjiI	CACGTC	1 cut(s)	291
AluBI	AGCT	2 cut(s)	205, 376
AluI	AGCT	2 cut(s)	205, 376
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	69, 506
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	3 cut(s)	47, 117, 306
ApeKI	GCWGC	3 cut(s)	105, 272, 484
AsiGI	ACCGGT	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	306, 349, 370
AsuC2I	CCSGG	3 cut(s)	138, 332, 353
AsuHPI	GGTGA	5 cut(s)	35, 56, 77, 91, 183
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	349, 370
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	117, 259, 471
BceAI	ACGGC	2 cut(s)	381, 492
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	3 cut(s)	138, 332, 353
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	4 cut(s)	50, 106, 273, 485
BlsI	GCNGC	4 cut(s)	51, 107, 274, 486
Bme1390I	CCNGG	3 cut(s)	138, 332, 353
Bme18I	GGWCC	2 cut(s)	349, 370
BmeT110I	CYCGRG	1 cut(s)	494
BmgBI	CACGTC	1 cut(s)	291
BmgT120I	GGNCC	3 cut(s)	306, 349, 370
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	3 cut(s)	138, 332, 353
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	3 cut(s)	138, 332, 353
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	282, 314
BsaJI	CCNNGG	2 cut(s)	309, 345
BsaWI	WCCGGW	3 cut(s)	66, 80, 87
Bsc4I	CCNNNNNNNGG	9 cut(s)	45, 73, 80, 87, 101, 108, 115, 351, 437
Bse118I	RCCGGY	3 cut(s)	45, 66, 101
Bse1I	ACTGG	2 cut(s)	95, 431
Bse8I	GATNNNNATC	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	309, 345
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	9 cut(s)	45, 73, 80, 87, 101, 108, 115, 351, 437
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	95, 431
BseSI	GKGCMC	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	117, 259, 471
BsgI	GTGCAG	1 cut(s)	131
Bsh1285I	CGRYCG	2 cut(s)	50, 71
BshFI	GGCC	3 cut(s)	49, 119, 308
BshNI	GGYRCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	66
BsiEI	CGRYCG	2 cut(s)	50, 71
BsiHKCI	CYCGRG	1 cut(s)	494
BslI	CCNNNNNNNGG	9 cut(s)	45, 73, 80, 87, 101, 108, 115, 351, 437
BsmAI	GTCTC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	49, 119, 308
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	61, 360, 498
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	3 cut(s)	50, 368, 487
BspANI	GGCC	3 cut(s)	49, 119, 308
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	69, 506
BspT107I	GGYRCC	1 cut(s)	211
BsrFI	RCCGGY	3 cut(s)	45, 66, 101
BsrI	ACTGG	2 cut(s)	95, 431
BssAI	RCCGGY	3 cut(s)	45, 66, 101
BssECI	CCNNGG	2 cut(s)	309, 345
BssMI	GATC	3 cut(s)	61, 360, 498
BssNI	GRCGYC	2 cut(s)	282, 314
BssT1I	CCWWGG	2 cut(s)	309, 345
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	2 cut(s)	282, 314
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	64, 363, 501
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	61, 360, 498
BstMCI	CGRYCG	2 cut(s)	50, 71
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 476, 490
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	3 cut(s)	136, 330, 351
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	3 cut(s)	117, 259, 471
BstZI	CGGCCG	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	49, 119, 308
BtgI	CCRYGG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	438
Cfr10I	RCCGGY	3 cut(s)	45, 66, 101
Cfr13I	GGNCC	3 cut(s)	306, 349, 370
CseI	GACGC	3 cut(s)	290, 303, 431
Csp6I	GTAC	1 cut(s)	415
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	2 cut(s)	217, 310
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	3 cut(s)	63, 362, 500
DpnII	GATC	3 cut(s)	61, 360, 498
EaeI	YGGCCR	2 cut(s)	47, 117
EagI	CGGCCG	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	309, 345
Eco47I	GGWCC	2 cut(s)	349, 370
Eco52I	CGGCCG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	494
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	309, 345
ErhI	CCWWGG	2 cut(s)	309, 345
FaeI	CATG	2 cut(s)	220, 313
FaiI	YATR	4 cut(s)	20, 218, 311, 427
FatI	CATG	2 cut(s)	216, 309
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	50, 106, 273, 485
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	4 cut(s)	50, 106, 273, 485
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	4 cut(s)	50, 106, 273, 485
HaeIII	GGCC	3 cut(s)	49, 119, 308
HgaI	GACGC	3 cut(s)	290, 303, 431
Hin1I	GRCGYC	2 cut(s)	282, 314
Hin1II	CATG	2 cut(s)	220, 313
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	9 cut(s)	56, 77, 91, 112, 133, 188, 246, 323, 337
HphI	GGTGA	5 cut(s)	35, 56, 77, 91, 183
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	61, 245, 396
Hpy188III	TCNNGA	3 cut(s)	130, 278, 496
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	4 cut(s)	295, 319, 413, 478
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	2 cut(s)	290, 380
HpyCH4V	TGCA	2 cut(s)	148, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 476, 490
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	2 cut(s)	290, 380
Hsp92I	GRCGYC	2 cut(s)	282, 314
Hsp92II	CATG	2 cut(s)	220, 313
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	61, 360, 498
Lsp1109I	GCAGC	3 cut(s)	117, 259, 471
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	290, 380
MaeIII	GTNAC	4 cut(s)	41, 83, 97, 189
MalI	GATC	3 cut(s)	63, 362, 500
MboI	GATC	3 cut(s)	61, 360, 498
MboII	GAAGA	4 cut(s)	17, 216, 247, 250
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	1 cut(s)	179
MlyI	GAGTC	3 cut(s)	197, 255, 317
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	232, 295, 431, 483
MslI	CAYNNNNRTG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	138, 332, 353
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	281, 476, 490
NciI	CCSGG	3 cut(s)	138, 332, 353
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	3 cut(s)	61, 360, 498
NlaIII	CATG	2 cut(s)	220, 313
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	4 cut(s)	41, 83, 97, 189
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	6 cut(s)	56, 77, 91, 112, 133, 337
PfoI	TCCNGGA	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	51, 107, 274, 486
PleI	GAGTC	3 cut(s)	196, 254, 317
PpsI	GAGTC	3 cut(s)	196, 254, 317
PspEI	GGTNACC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	3 cut(s)	306, 349, 370
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	301
SalI	GTCGAC	1 cut(s)	248
SatI	GCNGC	4 cut(s)	50, 106, 273, 485
Sau3AI	GATC	3 cut(s)	61, 360, 498
Sau96I	GGNCC	3 cut(s)	306, 349, 370
SchI	GAGTC	3 cut(s)	197, 255, 317
ScrFI	CCNGG	3 cut(s)	138, 332, 353
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	6 cut(s)	207, 235, 293, 351, 378, 383
SinI	GGWCC	2 cut(s)	349, 370
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	3 cut(s)	50, 368, 487
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	136, 330, 351
StyI	CCWWGG	2 cut(s)	309, 345
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	2 cut(s)	293, 383
TaqI	TCGA	3 cut(s)	249, 321, 408
TasI	AATT	1 cut(s)	179
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	6 cut(s)	56, 77, 91, 112, 133, 337
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	4 cut(s)	41, 83, 97, 189
TseI	GCWGC	3 cut(s)	105, 272, 484
Tsp45I	GTSAC	4 cut(s)	41, 83, 97, 189
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	349, 370
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.