Rh3DG340500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012704
Physical Location & Seq
Forward (+)
38061075 .. 38061401
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG340500.1

Sequence Viewer

Length: 210 bp
ATGATCGACAAGCTCTGCAGGCTCCGAGTCGAGGAGCTCCGTCGCGAGGTCATTGGAGCTGAAGGTGAAGAGGATGGAGGAGGAGGACAGAAACTGAAGCTTGAAGGTGGTAGAGGCGGAGCAGCCGGCTCAGGCCTCGTCTATTTTTCTACATGTGCATGGTTTACAGTTGCTAATTCGTTTAGTTTTGATTACCGAGTCTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.52

Weight (kDa)

5.05

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 117
AcuI CTGAAG 2 cut(s) 81, 116
AfiI CCNNNNNNNGG 2 cut(s) 31, 46
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 4 cut(s) 13, 37, 59, 100
AluI AGCT 4 cut(s) 13, 37, 59, 100
Alw21I GWGCWC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 46
Bse118I RCCGGY 1 cut(s) 125
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 31, 46
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 3 cut(s) 47, 93, 96
BseXI GCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 31, 46
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 3
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 143
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 20, 127
BstDEI CTNAG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 1 cut(s) 79
BtuMI TCGCGA 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 20, 127
CaiI CAGNNNCTG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 125
CviAII CATG 2 cut(s) 153, 159
CviJI RGCY 8 cut(s) 13, 22, 37, 59, 100, 125, 129, 135
CviKI_1 RGCY 8 cut(s) 13, 22, 37, 59, 100, 125, 129, 135
DdeI CTNAG 1 cut(s) 130
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 81, 116
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 156, 162
FaiI YATR 2 cut(s) 154, 160
FatI CATG 2 cut(s) 152, 158
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 135
HapII CCGG 1 cut(s) 126
Hin1II CATG 2 cut(s) 156, 162
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 27, 198
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 56, 98
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 18, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 130
Hsp92II CATG 2 cut(s) 156, 162
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 5 cut(s) 27, 34, 42, 56, 119
LpnPI CCDG 3 cut(s) 4, 117, 139
Lsp1109I GCAGC 1 cut(s) 134
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 80, 193
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 175
MlyI GAGTC 2 cut(s) 36, 207
MnlI CCTC 8 cut(s) 25, 40, 64, 71, 74, 77, 107, 146
MroNI GCCGGC 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 19
NaeI GCCGGC 1 cut(s) 127
NdeII GATC 1 cut(s) 3
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 2 cut(s) 156, 162
NlaIV GGNNCC 1 cut(s) 23
NruI TCGCGA 1 cut(s) 45
NspI RCATGY 1 cut(s) 156
PceI AGGCCT 1 cut(s) 135
PciI ACATGT 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 2 cut(s) 35, 206
PpsI GAGTC 2 cut(s) 35, 206
PscI ACATGT 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 20
PstNI CAGNNNCTG 1 cut(s) 94
RruI TCGCGA 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 157
SacI GAGCTC 1 cut(s) 39
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 2 cut(s) 36, 207
SduI GDGCHC 1 cut(s) 39
SetI ASST 7 cut(s) 15, 39, 51, 61, 67, 102, 109
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 1 cut(s) 175
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 1 cut(s) 117
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 135
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 3 cut(s) 6, 30, 204
TasI AATT 1 cut(s) 175
TseI GCWGC 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.