Rh6CG038400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012704
Physical Location & Seq
Forward (+)
3706466 .. 3706852
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG038400.1

Sequence Viewer

Length: 387 bp
ATGAGACGAAATCTCTTCCGTCTTCTCTCAAACCCTAGCTGCCACAGCTGGGGGGTTCTATCAACGGCAGTTGGCGCCAACACCAAGCAGATGCTCTCTCTGCCTCTCGTTGCCTTTTCGCGATTATCCAACGTCGATTCTTTTCGACAAACTTTCAATCGGTCCTCCTCGCACCAAACAACGGTGTCTCTTTGCTTTCAGAAGCAAGGGACGCAAAGGATCTTGAATGTGTCTATGCTGGCAACCGGTGTGGGAAATCATGGGGAAGTTTTGATAATTTTCGATGTCAGGTTGCAGCGAGAGTTTTTTCAGTTGATTGGGGTCGAGTCCGGCCACGCAGAGCACGACTTAAGGCTGTGGACAGTTGGAGAGATTGACTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

9.48

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 121
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 49, 181
AflII CTTAAG 1 cut(s) 349
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 2 cut(s) 157, 226
AluBI AGCT 2 cut(s) 39, 48
AluI AGCT 2 cut(s) 39, 48
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 39, 295
AsiGI ACCGGT 1 cut(s) 245
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 162
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 26, 307
BceAI ACGGC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 349
BisI GCNGC 2 cut(s) 40, 296
BlsI GCNGC 2 cut(s) 41, 297
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 181
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 49, 181
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 26, 307
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 74
BshTI ACCGGT 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 246, 330
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 2 cut(s) 49, 181
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 121
BspANI GGCC 1 cut(s) 333
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 184, 364
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 240
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 45, 74, 100, 211
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 26, 307
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 1 cut(s) 333
BtuMI TCGCGA 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 220
CspAI ACCGGT 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 39, 48, 333, 355
CviKI_1 RGCY 4 cut(s) 39, 48, 333, 355
DinI GGCGCC 1 cut(s) 76
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 162
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
FaeI CATG 1 cut(s) 263
FaiI YATR 2 cut(s) 236, 261
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 40, 296
Fsp4HI GCNGC 2 cut(s) 40, 296
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 40, 296
GsaI CCCAGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 333
HapII CCGG 2 cut(s) 246, 330
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 2 cut(s) 137, 326
HpaII CCGG 2 cut(s) 246, 330
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 120, 223
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 184, 364
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 74, 100, 211
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 75
KasI GGCGCC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 34, 224, 259, 274, 343, 364
Lsp1109I GCAGC 2 cut(s) 26, 307
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 132
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 7, 14
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 276
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 153, 346
MnlI CCTC 3 cut(s) 114, 175, 178
MseI TTAA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 2 cut(s) 246, 330
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 4 cut(s) 45, 74, 100, 211
NarI GGCGCC 1 cut(s) 75
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 1 cut(s) 137
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 2 cut(s) 41, 297
PleI GAGTC 1 cut(s) 334
PluTI GGCGCC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 48
RruI TCGCGA 1 cut(s) 121
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 40, 296
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 345
SetI ASST 4 cut(s) 41, 50, 135, 293
SfaNI GCATC 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 76
SinI GGWCC 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 1 cut(s) 276
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 184, 364
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 135, 145, 282, 324
TaqII GACCGA 1 cut(s) 150
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TseI GCWGC 2 cut(s) 39, 295
TspGWI ACGGA 1 cut(s) 8
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 162
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.