Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012704

Physical Location & Seq

Genomic Coordinates Forward (+)

1076083 .. 1080706

Gene Structure 4624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTTTGTGCTCCGAGCTCTTCTGCTACTACTGTTGGGGATCAGTGCATGGTTACTTCTTCAGGCTCTACTCCCATATTAGGATCGAAGAGGTTGGCGTTAGAAGAGAAAATAAACCATTGTGATTATGAAAAGTACAATGTGGAATGTATCCAAATAAGAGACGCCTCCACGTTGTCGCTACTGTGGGCGGTGGCGTCACTCGAGTCGCACCCGGAGATTCTGGCCAAGGTCCGGGAACTGATCACGGCGGACCAGCTAACGCGGATGAGGTACACGTACTCGGTGGTTCTTGAGGTCGTGAGGTATTACGCTCCAGCCACCATGGTCCCTAACTTTGATGTTGTTGACTTTCCGTTTTCCGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000249 GO:0003674 GO:0003824 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0044238 GO:0055114 GO:0070704 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

123

Amino Acids

13.75

Weight (kDa)

4.9

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012704)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003511.1_g000020 Rmu_sc0005098.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109960 Rroxscaffold_7G00157020
rosa_samantha	Rh1AG128600 Rh1CG007100 Rh1CG122400 Rh3AG173000 Rh3BG232200 Rh3CG189600 Rh3CG338500 Rh3DG340400 Rh3DG340500 Rh4BG200500 Rh5BG183400 Rh5CG165500 Rh5DG102500 Rh6CG038400 Rh7DG373800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	265
AciI	CCGC	3 cut(s)	191, 251, 265
AclWI	GGATC	2 cut(s)	48, 91
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	2 cut(s)	165, 197
AfaI	GTAC	3 cut(s)	137, 275, 281
AfiI	CCNNNNNNNGG	2 cut(s)	80, 234
AflIII	ACRYGT	1 cut(s)	276
AluBI	AGCT	2 cut(s)	18, 259
AluI	AGCT	2 cut(s)	18, 259
Alw21I	GWGCWC	2 cut(s)	13, 20
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	48, 91
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	232, 253, 328
AsuC2I	CCSGG	2 cut(s)	215, 236
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	3 cut(s)	232, 253, 328
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	13, 20
BceAI	ACGGC	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	215, 236
BcoDI	GTCTC	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	215, 236
Bme18I	GGWCC	3 cut(s)	232, 253, 328
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	232, 253, 328
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	215, 236
BpmI	CTGGAG	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	215, 236
BsaAI	YACGTR	1 cut(s)	279
BsaHI	GRCGYC	2 cut(s)	165, 197
BsaJI	CCNNGG	2 cut(s)	228, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 234
BseDI	CCNNGG	2 cut(s)	228, 324
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	80, 234
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	13, 20
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	215, 235
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	80, 234
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	13, 20
Bsp143I	GATC	3 cut(s)	40, 83, 243
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	3 cut(s)	191, 251, 265
BspANI	GGCC	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	48, 91
BspQI	GCTCTTC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	228, 324
BssMI	GATC	3 cut(s)	40, 83, 243
BssNI	GRCGYC	2 cut(s)	165, 197
BssT1I	CCWWGG	2 cut(s)	228, 324
Bst4CI	ACNGT	2 cut(s)	34, 186
Bst6I	CTCTTC	3 cut(s)	25, 83, 99
BstACI	GRCGYC	2 cut(s)	165, 197
BstBAI	YACGTR	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	43, 86, 246
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	40, 83, 243
BstSCI	CCNGG	2 cut(s)	213, 234
BstUI	CGCG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	232, 253, 328
CseI	GACGC	2 cut(s)	173, 186
Csp6I	GTAC	3 cut(s)	136, 274, 280
CviAII	CATG	2 cut(s)	49, 325
CviJI	RGCY	5 cut(s)	18, 66, 227, 259, 320
CviKI_1	RGCY	5 cut(s)	18, 66, 227, 259, 320
CviQI	GTAC	3 cut(s)	136, 274, 280
DpnI	GATC	3 cut(s)	42, 85, 245
DpnII	GATC	3 cut(s)	40, 83, 243
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	25, 83, 99
EarI	CTCTTC	3 cut(s)	25, 83, 99
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	228, 324
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	232, 253, 328
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	228, 324
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	228, 324
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	52, 328
FaiI	YATR	4 cut(s)	50, 77, 129, 326
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	48, 324
FbaI	TGATCA	1 cut(s)	243
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	215, 235
HgaI	GACGC	2 cut(s)	173, 186
Hin1I	GRCGYC	2 cut(s)	165, 197
Hin1II	CATG	2 cut(s)	52, 328
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	206, 220
HpaII	CCGG	2 cut(s)	215, 235
Hpy166II	GTNNAC	2 cut(s)	276, 349
Hpy188I	TCNGA	2 cut(s)	15, 364
Hpy188III	TCNNGA	2 cut(s)	293, 301
Hpy8I	GTNNAC	2 cut(s)	276, 349
HpyCH4III	ACNGT	2 cut(s)	34, 186
HpyCH4IV	ACGT	2 cut(s)	173, 278
HpyCH4V	TGCA	1 cut(s)	48
HpySE526I	ACGT	2 cut(s)	173, 278
Hsp92I	GRCGYC	2 cut(s)	165, 197
Hsp92II	CATG	2 cut(s)	52, 328
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	40, 83, 243
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	16, 319
LpnPI	CCDG	6 cut(s)	48, 209, 228, 248, 269, 330
MaeII	ACGT	2 cut(s)	173, 278
MaeIII	GTNAC	2 cut(s)	52, 198
MalI	GATC	3 cut(s)	42, 85, 245
MboI	GATC	3 cut(s)	40, 83, 243
MboII	GAAGA	4 cut(s)	12, 51, 100, 116
MhlI	GDGCHC	2 cut(s)	13, 20
MlsI	TGGCCA	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	84, 178, 264, 289, 297
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	2 cut(s)	215, 235
MspR9I	CCNGG	2 cut(s)	215, 236
MvnI	CGCG	1 cut(s)	265
NciI	CCSGG	2 cut(s)	215, 236
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	3 cut(s)	40, 83, 243
NlaIII	CATG	2 cut(s)	52, 328
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	198
PaeR7I	CTCGAG	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	234
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	232, 253, 328
PspXI	VCTCGAGB	1 cut(s)	203
RsaI	GTAC	3 cut(s)	137, 275, 281
RsaNI	GTAC	3 cut(s)	136, 274, 280
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	25
Sau3AI	GATC	3 cut(s)	40, 83, 243
Sau96I	GGNCC	3 cut(s)	232, 253, 328
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	215, 236
SduI	GDGCHC	2 cut(s)	13, 20
SetI	ASST	9 cut(s)	20, 95, 176, 234, 261, 275, 281, 300, 308
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	3 cut(s)	232, 253, 328
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	203, 293
SmoI	CTYRAG	2 cut(s)	203, 293
SsiI	CCGC	3 cut(s)	191, 251, 265
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	213, 234
StyI	CCWWGG	2 cut(s)	228, 324
TaaI	ACNGT	2 cut(s)	34, 186
TaiI	ACGT	2 cut(s)	176, 281
TaqI	TCGA	2 cut(s)	86, 204
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	50
VpaK11BI	GGWCC	3 cut(s)	232, 253, 328
XhoI	CTCGAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.