Rroxscaffold_2G00109960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012704
Physical Location & Seq
Forward (+)
34203230 .. 34203615
386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109960.1

Sequence Viewer

Length: 303 bp
ATGGCGTCGCTCGACTCGCTCCCGAGATTCGGCCAAGGTCCCGAACCGCTCACGGCGGACCGGCTAACACGGATGAGGTACATGCACTCGGTGGTTCTTGAGGTCTACGCCGACGCAGATCTAGTGAGAGGGATAACGCGAGTGCCGAATGATAATGATAACGACAACGCCGAGGCCGCGAGGCTCGGGATCGGCGAACAAATCGAACGACGACGAGAACGTCCGAGTGGCCGGAGCTCCAATCGGAGCTTCTTCTTCATCGTCTTCGAGCTTGGATCGCATCTCCAGCGCAGCCGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

8.37

Isoelectric Point (pI)

68.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 219
AccBSI CCGCTC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 105
AccII CGCG 2 cut(s) 139, 179
AciI CCGC 3 cut(s) 47, 56, 177
AclWI GGATC 2 cut(s) 197, 283
AcoI YGGCCR 2 cut(s) 31, 229
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 237, 249, 271
AluI AGCT 3 cut(s) 237, 249, 271
Alw21I GWGCWC 1 cut(s) 239
AlwI GGATC 2 cut(s) 197, 283
Ama87I CYCGRG 2 cut(s) 22, 185
AoxI GGCC 3 cut(s) 31, 174, 229
ApeKI GCWGC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 38, 58
AvaI CYCGRG 2 cut(s) 22, 185
AvaII GGWCC 2 cut(s) 38, 58
BanII GRGCYC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 69
BfaI CTAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 118
BisI GCNGC 2 cut(s) 177, 292
BlsI GCNGC 2 cut(s) 178, 293
Bme18I GGWCC 2 cut(s) 38, 58
BmeT110I CYCGRG 2 cut(s) 22, 185
BmgT120I GGNCC 2 cut(s) 38, 58
BmiI GGNNCC 1 cut(s) 40
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 34, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 34, 171
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 29
Bsh1236I CGCG 2 cut(s) 139, 179
BshFI GGCC 3 cut(s) 33, 176, 231
BsiHKAI GWGCWC 1 cut(s) 239
BsiHKCI CYCGRG 2 cut(s) 22, 185
BsiSI CCGG 2 cut(s) 61, 232
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 3 cut(s) 33, 176, 231
BsoBI CYCGRG 2 cut(s) 22, 185
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 4 cut(s) 118, 189, 275, 296
BspACI CCGC 3 cut(s) 47, 56, 177
BspANI GGCC 3 cut(s) 33, 176, 231
BspFNI CGCG 2 cut(s) 139, 179
BspHI TCATGA 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 197, 283
BsrBI CCGCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 34, 171
BssMI GATC 4 cut(s) 118, 189, 275, 296
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 2 cut(s) 139, 179
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 4 cut(s) 121, 192, 278, 299
BstMBI GATC 4 cut(s) 118, 189, 275, 296
BstMWI GCNNNNNNNGC 4 cut(s) 16, 176, 277, 286
BstNSI RCATGY 1 cut(s) 85
BstUI CGCG 2 cut(s) 139, 179
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 33, 176, 231
BtsCI GGATG 1 cut(s) 78
CciI TCATGA 1 cut(s) 299
CfoI GCGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 38, 58
CpoI CGGWCCG 1 cut(s) 58
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 79
CspI CGGWCCG 1 cut(s) 58
CviAII CATG 2 cut(s) 82, 300
CviJI RGCY 9 cut(s) 33, 64, 176, 184, 231, 237, 249, 271, 294
CviKI_1 RGCY 9 cut(s) 33, 64, 176, 184, 231, 237, 249, 271, 294
CviQI GTAC 1 cut(s) 79
DpnI GATC 4 cut(s) 120, 191, 277, 298
DpnII GATC 4 cut(s) 118, 189, 275, 296
DraIII CACNNNGTG 1 cut(s) 91
DrdI GACNNNNNNGTC 1 cut(s) 219
DseDI GACNNNNNNGTC 1 cut(s) 219
EaeI YGGCCR 2 cut(s) 31, 229
EciI GGCGGA 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 38, 58
Eco53kI GAGCTC 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 22, 185
EcoICRI GAGCTC 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 85, 303
FaiI YATR 2 cut(s) 83, 301
FaqI GGGAC 1 cut(s) 24
FatI CATG 2 cut(s) 81, 299
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 177, 292
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 2 cut(s) 177, 292
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 290
GluI GCNGC 2 cut(s) 177, 292
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 33, 176, 231
HapII CCGG 2 cut(s) 61, 232
HgaI GACGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 85, 303
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 14, 27
HpaII CCGG 2 cut(s) 61, 232
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 225, 246
Hpy188III TCNNGA 5 cut(s) 22, 41, 98, 187, 300
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 4 cut(s) 10, 116, 213, 216
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 176, 277, 286
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 85, 303
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 4 cut(s) 118, 189, 275, 296
LmnI GCTCC 4 cut(s) 24, 234, 242, 246
LpnPI CCDG 3 cut(s) 74, 245, 299
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 220
MalI GATC 4 cut(s) 120, 191, 277, 298
MbiI CCGCTC 1 cut(s) 49
MboI GATC 4 cut(s) 118, 189, 275, 296
MboII GAAGA 3 cut(s) 244, 247, 256
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 239
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 5 cut(s) 69, 94, 122, 166, 174
MspI CCGG 2 cut(s) 61, 232
MvnI CGCG 2 cut(s) 139, 179
MwoI GCNNNNNNNGC 4 cut(s) 16, 176, 277, 286
NdeII GATC 4 cut(s) 118, 189, 275, 296
NlaIII CATG 2 cut(s) 85, 303
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 196
NspI RCATGY 1 cut(s) 85
PagI TCATGA 1 cut(s) 299
PcsI WCGNNNNNNNCGW 4 cut(s) 143, 168, 192, 217
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 178, 293
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 38, 58
PspPPI RGGWCCY 1 cut(s) 38
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
Rsr2I CGGWCCG 1 cut(s) 58
RsrII CGGWCCG 1 cut(s) 58
SacI GAGCTC 1 cut(s) 239
SatI GCNGC 2 cut(s) 177, 292
Sau3AI GATC 4 cut(s) 118, 189, 275, 296
Sau96I GGNCC 2 cut(s) 38, 58
SchI GAGTC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 239
SetI ASST 7 cut(s) 40, 80, 105, 223, 239, 251, 273
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 2 cut(s) 38, 58
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 3 cut(s) 47, 56, 177
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 239
StyI CCWWGG 1 cut(s) 34
TaiI ACGT 1 cut(s) 223
TaqI TCGA 3 cut(s) 12, 204, 267
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 27
TseI GCWGC 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 85
VpaK11BI GGWCC 2 cut(s) 38, 58
XceI RCATGY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.