Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012704

Physical Location & Seq

Genomic Coordinates Forward (+)

20173487 .. 20176973

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG183400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGGATCGTCTCATCTCGATTGGATTGGAGGGGGATTTTGGAATTTTACGCCTCCACGTCGTCGCTACTGTGGGCGGTGGCATCGCTCGACTCGCACCCGGAGATTCTGGCCAAGGTCCGGGAACTGATCACGGCGGACCAGCTAACGCTGATGAGGTACACGTACTCGGTGGTTCTTGAGGTCGTGAGGTACTGCGCTCCGGCCACCATGGTCCCTAACGTTGATGTTGTTGACTTTCCGTTTTCCGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000249 GO:0003674 GO:0003824 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0044238 GO:0055114 GO:0070704 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

85

Amino Acids

9.68

Weight (kDa)

5.18

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012704)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003511.1_g000020 Rmu_sc0005098.1_g000016
rosa_roxburghii	Rroxscaffold_2G00109960 Rroxscaffold_7G00157020
rosa_samantha	Rh1AG128600 Rh1CG007100 Rh1CG122400 Rh3AG173000 Rh3BG232200 Rh3CG189600 Rh3CG338500 Rh3DG340400 Rh3DG340500 Rh4BG200500 Rh5BG183400 Rh5CG165500 Rh5DG102500 Rh6CG038400 Rh7DG373800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 137
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	2 cut(s)	111, 204
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	3 cut(s)	161, 167, 194
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	162
AjiI	CACGTC	1 cut(s)	60
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	111, 204
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	118, 139, 214
AsuC2I	CCSGG	2 cut(s)	101, 122
AvaII	GGWCC	3 cut(s)	118, 139, 214
BalI	TGGCCA	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	150
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	2 cut(s)	101, 122
BcoDI	GTCTC	1 cut(s)	16
Bme1390I	CCNGG	2 cut(s)	101, 122
Bme18I	GGWCC	3 cut(s)	118, 139, 214
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	3 cut(s)	118, 139, 214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	101, 122
BmsI	GCATC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	101, 122
BsaAI	YACGTR	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	114, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	114, 210
BseLI	CCNNNNNNNGG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	113, 206
BsiSI	CCGG	3 cut(s)	101, 121, 203
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	113, 206
Bsp143I	GATC	2 cut(s)	6, 129
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	77, 137
BspANI	GGCC	2 cut(s)	113, 206
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	114, 210
BssMI	GATC	2 cut(s)	6, 129
BssT1I	CCWWGG	2 cut(s)	114, 210
Bst4CI	ACNGT	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	2 cut(s)	9, 132
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	6, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	99, 120
BsuRI	GGCC	2 cut(s)	113, 206
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	118, 139, 214
Csp6I	GTAC	3 cut(s)	160, 166, 193
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	3 cut(s)	113, 145, 206
CviKI_1	RGCY	3 cut(s)	113, 145, 206
CviQI	GTAC	3 cut(s)	160, 166, 193
DpnI	GATC	2 cut(s)	8, 131
DpnII	GATC	2 cut(s)	6, 129
EaeI	YGGCCR	2 cut(s)	111, 204
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	114, 210
Eco47I	GGWCC	3 cut(s)	118, 139, 214
EcoT14I	CCWWGG	2 cut(s)	114, 210
ErhI	CCWWGG	2 cut(s)	114, 210
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	214
FaiI	YATR	1 cut(s)	212
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	129
GlaI	GCGC	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	113, 206
HapII	CCGG	3 cut(s)	101, 121, 203
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	92, 106
HpaII	CCGG	3 cut(s)	101, 121, 203
Hpy166II	GTNNAC	2 cut(s)	162, 235
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	18, 179, 187
Hpy8I	GTNNAC	2 cut(s)	162, 235
Hpy99I	CGWCG	2 cut(s)	64, 67
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	3 cut(s)	59, 164, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	3 cut(s)	59, 164, 222
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	6, 129
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	95, 114, 134, 155, 216
LweI	GCATC	1 cut(s)	92
MaeII	ACGT	3 cut(s)	59, 164, 222
MalI	GATC	2 cut(s)	8, 131
MboI	GATC	2 cut(s)	6, 129
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	24, 64, 150, 175, 183
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	3 cut(s)	101, 121, 203
MspR9I	CCNGG	2 cut(s)	101, 122
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	2 cut(s)	101, 122
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	6, 129
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	120
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	165
Psp1406I	AACGTT	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	118, 139, 214
RsaI	GTAC	3 cut(s)	161, 167, 194
RsaNI	GTAC	3 cut(s)	160, 166, 193
Sau3AI	GATC	2 cut(s)	6, 129
Sau96I	GGNCC	3 cut(s)	118, 139, 214
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	101, 122
SetI	ASST	8 cut(s)	62, 120, 147, 161, 167, 186, 194, 225
SfaNI	GCATC	1 cut(s)	92
SinI	GGWCC	3 cut(s)	118, 139, 214
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	77, 137
StyD4I	CCNGG	2 cut(s)	99, 120
StyI	CCWWGG	2 cut(s)	114, 210
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	3 cut(s)	62, 167, 225
TaqI	TCGA	2 cut(s)	19, 90
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	231
VpaK11BI	GGWCC	3 cut(s)	118, 139, 214
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.