Rh5CG165500
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012704
Physical Location & Seq
Forward (+)
15407817 .. 15408147
331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG165500.1

Sequence Viewer

Length: 240 bp
ATGGTCGACAAGCTCTGCAGGCTCCGAGTTGAGGAGCTCCGACGCGAGGTCCGCCGTTGCGACTTTTCGATTGTGTCGTTGGAGCTGAAGGTGAAGAGGATGGAGGAGGAGGACAGAGACCGAAGCTTGAAGGTGGCAGAGGCGGAGCAGCCGGCTCAGGCCTCGTCTATTTTTCTACATGTGCATGGTTTACAGTTGCTAATTCGTTTCGTTTTGATTACCGAGTCTTCGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

79

Amino Acids

9.28

Weight (kDa)

6.12

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 52, 143
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 31, 46
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 1 cut(s) 130
AhdI GACNNNNNGTC 1 cut(s) 47
AluBI AGCT 4 cut(s) 13, 37, 85, 126
AluI AGCT 4 cut(s) 13, 37, 85, 126
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 49
BmeRI GACNNNNNGTC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 46
Bse118I RCCGGY 1 cut(s) 151
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 31, 46
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 3 cut(s) 47, 119, 122
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 31, 46
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 39
BspACI CCGC 2 cut(s) 52, 143
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 20, 153
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 19, 51
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 20, 153
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 51
CviAII CATG 2 cut(s) 179, 185
CviJI RGCY 8 cut(s) 13, 22, 37, 85, 126, 151, 155, 161
CviKI_1 RGCY 8 cut(s) 13, 22, 37, 85, 126, 151, 155, 161
DdeI CTNAG 1 cut(s) 156
DriI GACNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 2 cut(s) 41, 158
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 182, 188
FaiI YATR 2 cut(s) 180, 186
FatI CATG 2 cut(s) 178, 184
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 182, 188
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 7, 191
Hpy188I TCNGA 2 cut(s) 26, 41
Hpy8I GTNNAC 2 cut(s) 7, 191
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 82, 124
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 18, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 51
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 182, 188
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
LmnI GCTCC 5 cut(s) 27, 34, 42, 82, 145
LpnPI CCDG 3 cut(s) 4, 143, 165
Lsp1109I GCAGC 1 cut(s) 160
MboII GAAGA 2 cut(s) 106, 219
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 60, 64
MnlI CCTC 8 cut(s) 25, 40, 90, 97, 100, 103, 133, 172
MroNI GCCGGC 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 19, 51
NaeI GCCGGC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 182, 188
NlaIV GGNNCC 1 cut(s) 23
NspI RCATGY 1 cut(s) 182
PceI AGGCCT 1 cut(s) 161
PciI ACATGT 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PscI ACATGT 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 233
SduI GDGCHC 1 cut(s) 39
SetI ASST 7 cut(s) 15, 39, 51, 87, 93, 128, 135
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 1 cut(s) 201
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 2 cut(s) 52, 143
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 161
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 6, 68, 230
TaqII GACCGA 1 cut(s) 135
TasI AATT 1 cut(s) 201
TseI GCWGC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 49
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.