Rh3CG338500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012704
Physical Location & Seq
Forward (+)
37837610 .. 37842534
4925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG338500.1

Sequence Viewer

Length: 273 bp
ATGCCTCGCCAGATACATGAGTTGCGTCACCGTGCTAGGCAAAGAAGAGAAAGCCAACCCCACCCTGACGCCGGGGAGGACGATCTTCTTTTGAGATTTGATTACGGAAAGGTCGTTGGAGCTGAAGGTGAAGAGGATGGAGGAGGAGGACAGAGACTGAAGCTTGAAGGTGGTAGAGGCGGAGCAGCCGGCTCAGGCCTCGTCTATTTTTCTACATGTGCATGGTTTACAGTTGCTAATTCGTTTCATTTTGATTACCGAGTCTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

6.05

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AcuI CTGAAG 2 cut(s) 144, 179
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 122, 163
AluI AGCT 2 cut(s) 122, 163
Alw26I GTCTC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 20, 140
BaeI ACNNNNGTAYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 131
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 156, 159
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 72, 189
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 82
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 32, 232
Bst6I CTCTTC 2 cut(s) 40, 126
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 188
CseI GACGC 2 cut(s) 14, 77
CviAII CATG 3 cut(s) 17, 216, 222
CviJI RGCY 6 cut(s) 54, 122, 163, 188, 192, 198
CviKI_1 RGCY 6 cut(s) 54, 122, 163, 188, 192, 198
DdeI CTNAG 1 cut(s) 193
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 40, 126
EarI CTCTTC 2 cut(s) 40, 126
EciI GGCGGA 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 144, 179
FaeI CATG 3 cut(s) 20, 219, 225
FaiI YATR 3 cut(s) 18, 217, 223
FatI CATG 3 cut(s) 16, 215, 221
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 186
HaeIII GGCC 1 cut(s) 198
HapII CCGG 2 cut(s) 72, 189
HgaI GACGC 2 cut(s) 14, 77
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 3 cut(s) 20, 219, 225
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 261
HpaII CCGG 2 cut(s) 72, 189
HphI GGTGA 2 cut(s) 20, 140
Hpy166II GTNNAC 1 cut(s) 228
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 2 cut(s) 119, 161
HpyCH4III ACNGT 2 cut(s) 32, 232
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 3 cut(s) 20, 219, 225
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 119, 182
LpnPI CCDG 5 cut(s) 23, 78, 85, 180, 202
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 57, 77, 143, 256
MluCI AATT 1 cut(s) 238
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 8 cut(s) 15, 70, 127, 134, 137, 140, 170, 209
MroNI GCCGGC 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 220
MspI CCGG 2 cut(s) 72, 189
MspR9I CCNGG 1 cut(s) 73
NaeI GCCGGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 73
NdeII GATC 1 cut(s) 82
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 20, 219, 225
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 219
PceI AGGCCT 1 cut(s) 198
PciI ACATGT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 220
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 82
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 73
SetI ASST 5 cut(s) 114, 124, 130, 165, 172
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 1 cut(s) 238
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 36
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 32, 232
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 238
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 120
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.