Rh4BG200500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012704
Physical Location & Seq
Reverse (-)
34423357 .. 34423569
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG200500.1

Sequence Viewer

Length: 213 bp
ATGTCGTCGCTGCTGTGGGTGGTGGCATCGTTCGACTCGCATTCGGAGGTTCTGGCCAAGGTCCAGGAACTGATCAATGCTGACCAGCTGGTGCGGATGAGGTGGGGTTGTGAGGTACCGCGCTCCAGCCACCATGGTCCCTCACTTTGCACCTCCGACGAGTACGCCGACGCAGATCCAGTGAGAGGGATGAGAGAGAGAGTGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.92

Weight (kDa)

6.02

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 115
AccII CGCG 1 cut(s) 121
AciI CCGC 2 cut(s) 94, 119
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 54
AfaI GTAC 2 cut(s) 117, 164
AfiI CCNNNNNNNGG 1 cut(s) 185
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 10
Asp718I GGTACC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 61, 137
AvaII GGWCC 2 cut(s) 61, 137
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 65
BclI TGATCA 1 cut(s) 72
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 2 cut(s) 61, 137
BmgT120I GGNCC 2 cut(s) 61, 137
BmiI GGNNCC 2 cut(s) 117, 139
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 57, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 57, 133
BseGI GGATG 2 cut(s) 102, 195
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 72, 175
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 2 cut(s) 94, 119
BspANI GGCC 1 cut(s) 56
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 117, 139
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 57, 133
BssMI GATC 2 cut(s) 72, 175
BssT1I CCWWGG 2 cut(s) 57, 133
Bst2UI CCWGG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 102, 195
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 2 cut(s) 75, 178
BstMBI GATC 2 cut(s) 72, 175
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 102, 195
BtsIMutI CAGTG 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 61, 137
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 116, 163
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 56, 88, 129
CviKI_1 RGCY 3 cut(s) 56, 88, 129
CviQI GTAC 2 cut(s) 116, 163
DpnI GATC 2 cut(s) 74, 177
DpnII GATC 2 cut(s) 72, 175
EaeI YGGCCR 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 57, 133
Eco47I GGWCC 2 cut(s) 61, 137
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 57, 133
ErhI CCWWGG 2 cut(s) 57, 133
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 135, 207
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 2 cut(s) 109, 202
Fsp4HI GCNGC 1 cut(s) 11
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 1 cut(s) 56
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 137
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 46, 157
Hpy99I CGWCG 3 cut(s) 10, 161, 173
HpyCH4V TGCA 2 cut(s) 150, 205
Hsp92II CATG 1 cut(s) 137
HspAI GCGC 1 cut(s) 121
KpnI GGTACC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 72, 175
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 7 cut(s) 38, 50, 74, 77, 98, 139, 192
LweI GCATC 1 cut(s) 35
MalI GATC 2 cut(s) 74, 177
MboI GATC 2 cut(s) 72, 175
MflI RGATCY 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 40, 93, 106, 151, 163, 179
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 65
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 133
NdeII GATC 2 cut(s) 72, 175
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 2 cut(s) 117, 139
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 117, 139
PspPI GGNCC 2 cut(s) 61, 137
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 117, 164
RsaNI GTAC 2 cut(s) 116, 163
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 2 cut(s) 72, 175
Sau96I GGNCC 2 cut(s) 61, 137
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 65
SetI ASST 6 cut(s) 51, 63, 90, 104, 117, 155
SfaNI GCATC 1 cut(s) 35
SinI GGWCC 2 cut(s) 61, 137
SsiI CCGC 2 cut(s) 94, 119
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 57, 133
TaqI TCGA 1 cut(s) 33
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 10
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 61, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.