Rh4BG336600

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
49977226 .. 49981310
4085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG336600.1

Sequence Viewer

Length: 282 bp
ATGTTGATGAAACTGCTTCGATTCGCTGCGCTTCTTATTCTCTCCTCTAAAATCTACATAGTTAAGGTGACAAATCAAGAACATTGCAAGAAGGACAAAGTGAAGAGTGCTGGAAAGCCATCAAAGGCAGCCAAGAAGCCTGACCAAGACACTAACAAAAAACAAAGGTCAAAGAAAGCTACCACTGCTGAAATAATCGACATGAAAACACCCCCAGAGCTTCTACCAGAGAGCCCAAAAAGTGAAGTTGTACTACCATATAGACTCAGGAAGAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.55

Weight (kDa)

10.18

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 252
AluBI AGCT 2 cut(s) 179, 220
AluI AGCT 2 cut(s) 179, 220
ApeKI GCWGC 2 cut(s) 26, 128
AspLEI GCGC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 79
BanII GRGCYC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BbvI GCAGC 2 cut(s) 13, 140
BccI CCATC 1 cut(s) 127
BisI GCNGC 2 cut(s) 27, 129
BlsI GCNGC 2 cut(s) 28, 130
Bse3DI GCAATG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 2 cut(s) 13, 140
Bsp1286I GDGCHC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 98, 266
BstDEI CTNAG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 31
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 13, 140
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
CfoI GCGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 118, 131, 139, 179, 220, 234
CviKI_1 RGCY 6 cut(s) 118, 131, 139, 179, 220, 234
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 98, 266
EarI CTCTTC 2 cut(s) 98, 266
Eco24I GRGCYC 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 1 cut(s) 205
FaiI YATR 5 cut(s) 59, 203, 259, 261, 280
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 27, 129
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 27, 129
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 27, 129
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 2 cut(s) 21, 264
HphI GGTGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 77, 268
HpyAV CCTTC 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 96, 153, 228, 240, 253
Lsp1109I GCAGC 2 cut(s) 13, 140
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 236
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 1 cut(s) 55
MseI TTAA 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 185
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 28, 130
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 27, 129
SchI GAGTC 1 cut(s) 258
SduI GDGCHC 1 cut(s) 236
SetI ASST 4 cut(s) 69, 170, 181, 222
SgeI CNNG 9 cut(s) 89, 100, 123, 145, 152, 158, 214, 227, 239
TaqI TCGA 2 cut(s) 19, 198
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 26, 128
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 23, 218
TspRI CASTG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.