Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007892

Physical Location & Seq

Genomic Coordinates Forward (+)

2924109 .. 2927565

Gene Structure 3457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G038900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGGTAGCTGCTGTCGACTCATTCACCGCCAACACTTACGAAGAGGCTCGCAACCAACGCCTTGAAGAAAACAAAAGGAAGTTCCAGGATTTGGGAATTTCAAACATTTCGAAGACTCTGACCCACTTGACTGCTTCTCCGAACAAGTCCCAGCAACGTGTTTCAAGACCCAAAGCAAAAAATACCTGTTTTGATTTAGAGCCAAGACGGTCTTCCCGTCAACGCAACCCAATCCAATCGTATCGTGATGATGTTGACATAGGCCTGCCAACTTTGAGGAAAAGGTCAAGGAAAACTTCATCTTCATGGGGAAGCTACCTTGCAAGGCCTATAGAGGAGGTCAGAGCTGCTTCTTATGAAGAAAGGAGTGCTGCTTTTCAAGCTGCAGAGAAGCTTCAAGAGAATCTACAGACTGAGAATCCAACTTTTGTCAAATCGATGGTTCGGTCTCATGTTTATAGCTGTTTCTGGTTGGGGCTTCCTTCAAAATTTTGCGAGGATCATCTCTCAAAAATGGGGTCGGAAATGGTACTAGAGGATGAAGATGGCAATGAGTATGATGCTGTCTACATTGGCAAGAGGGCTGGGCTTAGTGGGGGCTGGAGAGGGTTTGCTTTGGAACACAAGTTGGATGATGGTGATGCGCTTGTGTTTGAACTGACTGAACCCGCAAGATTTAAGATCTACATAGTTAAGGCATACCCCATGCCGAGTCTAGAATGTTTCAAAAACAATGTGGACAAAGAAGAGATTACCAGTGCTGAAAAGACATCAAAGGCAGCCATGAAGACTGACTCAGAATCAAATCAGAAACGAAGGTCAAAGAGAGGTATTGTGCCTGAGATGGATGAGTCTCAAACTTCCCCACACCCAGAACCAAATCAGAAACGAAGGTCAAAGAGAGGTACTGTGCCTGCAATTGTTGACACAAAAACTTCCCCAGACTCGGAATCGATTCAGAAACGAAGGTCAGAGAGAGGTGTTGTGCCTGTGATGGAAGACTCAAAAACTTCCCCCGTCTTGGAACCAAATCAGAGACGAAGGTCAAAGAGAGGTATGGTGCCTGAGATGGATGACACAAAAACTTTCCCAGACTCGGAATCGATTCAGAAACGGAGGTCAGAGAGAGGTGTTGTGCCTGTGATGAAAGACTCAAAAACTTCCCCAGTCTTGGAACCAAATCAGAGACGAAGGTCAAAGAGAGGTATGGTGCCTGAGATGGATGACACAAAAACTTTCCCAGACTCAGAACCAAATCAGAAACGAAGGTCAAAGAGAGGTACTGTGCCTGCAATGGTTGACACAAAAACTTCCCAAGACTCGGAATCAATTCAGAAACTAAGGTCGGAGAGAGGTGTTGTGCCTGTGATGGAAGACTCAAAAACTTCCCCCGTCTTGGAACCAAATCAGAGACGAAGGTCAAAGAGAGGTATGGTGCCTGAGATGGATGACACAAAAACTTCCCCAGACTCAGAATCGAATCAGAAACAAAGGTCAAAGAGAGGTATCGTGCCCGAAATGGATGACACAAAAACTACTCCGAAGGTTCTGCCAGATAGCCCCAAAGGTCAAGAAATCAAACAGGAAGTCAGCCCGATGAAGAAGAATGAAGTTGCTCCTAAACAAATTAGAAAGAAAGCTAAAGCAAACAGAGTTCGTAGCACAGAAAATCCAGAAGGTTGCGAAGTACAGGAAGCAAGCACGGAAAGTCCAGAAGGTTGTGAAGTCAAACAGGAAGCAAGCACAACTGAAACGGATAGTAGAGTTGTTAAAGATGAGAAGGAATGTGTAGCTAGGAAACCCAGAAAGAAAGTTGTAAAGGAAAGGCTTTTCCGAAAGAGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

616

Amino Acids

69.93

Weight (kDa)

9.54

Isoelectric Point (pI)

83.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58280 AT5G58280 AT5G58280
fragaria_vesca	FvH4_3g40930
malus_domestica	MD03G1047900.v1.1
prunus_persica	Prupe.6G038900_v2.0.a1 Prupe.6G038900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073681
rosa_laevigata	RLG00000036404
rosa_multiflora	Rmu_sc0002489.1_g000030 Rmu_sc0004501.1_g000001 Rmu_sc0009248.1_g000006
rosa_roxburghii	Rroxscaffold_1G00007620 Rroxscaffold_5G00354120 Rroxscaffold_7G00170870
rosa_rugosa	Rorug05G0426000
rosa_samantha	Rh4BG336600 Rh4CG352000 Rh5AG482800 Rh5BG503900 Rh5CG527300 Rh5DG516000 Rh6BG387800
rosa_wichuraiana	Rw5G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	1060, 1210, 1435
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccI	GTMKAC	2 cut(s)	15, 567
AciI	CCGC	2 cut(s)	27, 669
AclWI	GGATC	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	96, 488
AfaI	GTAC	4 cut(s)	531, 907, 1282, 1689
AfiI	CCNNNNNNNGG	7 cut(s)	91, 946, 1021, 1096, 1171, 1321, 1396
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	8 cut(s)	65, 102, 165, 380, 398, 486, 656, 727
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	8 cut(s)	8, 315, 347, 383, 394, 462, 1640, 1793
AluI	AGCT	8 cut(s)	8, 315, 347, 383, 394, 462, 1640, 1793
Alw26I	GTCTC	5 cut(s)	453, 858, 1030, 1180, 1405
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	2 cut(s)	262, 326
ApeKI	GCWGC	5 cut(s)	8, 347, 371, 383, 779
ApoI	RAATTY	2 cut(s)	96, 488
ArsI	GACNNNNNNTTYG	4 cut(s)	503, 535, 1572, 1604
Asp700I	GAANNNNTTC	3 cut(s)	954, 1104, 1329
AspLEI	GCGC	1 cut(s)	646
AsuHPI	GGTGA	2 cut(s)	16, 650
AsuII	TTCGAA	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	1515
BanI	GGYRCC	3 cut(s)	1060, 1210, 1435
BbsI	GAAGAC	5 cut(s)	119, 204, 794, 1005, 1380
BbvI	GCAGC	4 cut(s)	334, 358, 370, 791
BccI	CCATC	9 cut(s)	433, 539, 629, 838, 988, 1063, 1213, 1363, 1438
BcgI	CGANNNNNNTGC	2 cut(s)	1531, 1565
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	5 cut(s)	453, 858, 1030, 1180, 1405
BfaI	CTAG	3 cut(s)	533, 716, 1794
BfmI	CTRYAG	3 cut(s)	330, 384, 407
BglII	AGATCT	1 cut(s)	681
BisI	GCNGC	5 cut(s)	9, 348, 372, 384, 780
BlsI	GCNGC	5 cut(s)	10, 349, 373, 385, 781
Bme1390I	CCNGG	1 cut(s)	86
BmiI	GGNNCC	6 cut(s)	1026, 1062, 1176, 1212, 1401, 1437
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	1160
BmsI	GCATC	2 cut(s)	550, 631
BmuI	ACTGGG	1 cut(s)	1160
BoxI	GACNNNNGTC	3 cut(s)	1042, 1192, 1417
BpiI	GAAGAC	5 cut(s)	119, 204, 794, 1005, 1380
BpmI	CTGGAG	1 cut(s)	622
Bpu14I	TTCGAA	1 cut(s)	110
Bsa29I	ATCGAT	3 cut(s)	437, 953, 1103
BsaI	GGTCTC	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	7 cut(s)	91, 946, 1021, 1096, 1171, 1321, 1396
Bse1I	ACTGG	2 cut(s)	756, 1166
Bse3DI	GCAATG	2 cut(s)	556, 1299
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	3 cut(s)	437, 953, 1103
BseGI	GGATG	7 cut(s)	544, 637, 853, 1078, 1228, 1453, 1528
BseLI	CCNNNNNNNGG	7 cut(s)	91, 946, 1021, 1096, 1171, 1321, 1396
BseMI	GCAATG	2 cut(s)	556, 1299
BseMII	CTCAG	8 cut(s)	405, 810, 831, 1056, 1206, 1260, 1431, 1485
BseNI	ACTGG	2 cut(s)	756, 1166
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	1515
BseXI	GCAGC	4 cut(s)	334, 358, 370, 791
BseYI	CCCAGC	2 cut(s)	150, 584
BshFI	GGCC	2 cut(s)	264, 328
BshNI	GGYRCC	3 cut(s)	1060, 1210, 1435
BshVI	ATCGAT	3 cut(s)	437, 953, 1103
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	7 cut(s)	91, 946, 1021, 1096, 1171, 1321, 1396
BsmAI	GTCTC	5 cut(s)	453, 858, 1030, 1180, 1405
BsmBI	CGTCTC	3 cut(s)	1030, 1180, 1405
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	264, 328
Bso31I	GGTCTC	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	1515
Bsp143I	GATC	2 cut(s)	499, 681
BspACI	CCGC	2 cut(s)	27, 669
BspANI	GGCC	2 cut(s)	264, 328
BspCNI	CTCAG	8 cut(s)	406, 809, 832, 1057, 1207, 1259, 1432, 1484
BspDI	ATCGAT	3 cut(s)	437, 953, 1103
BspLI	GGNNCC	6 cut(s)	1026, 1062, 1176, 1212, 1401, 1437
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	3 cut(s)	1060, 1210, 1435
BspTNI	GGTCTC	1 cut(s)	453
BsrDI	GCAATG	2 cut(s)	556, 1299
BsrI	ACTGG	2 cut(s)	756, 1166
BssMI	GATC	2 cut(s)	499, 681
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	210, 910, 1285
Bst6I	CTCTTC	2 cut(s)	36, 741
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	6 cut(s)	49, 266, 915, 1290, 1699, 1741
BstF5I	GGATG	7 cut(s)	544, 637, 853, 1078, 1228, 1453, 1528
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	2 cut(s)	502, 684
BstMAI	GTCTC	5 cut(s)	453, 858, 1030, 1180, 1405
BstMBI	GATC	2 cut(s)	499, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 380
BstNI	CCWGG	1 cut(s)	86
BstPAI	GACNNNNGTC	3 cut(s)	1042, 1192, 1417
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	3 cut(s)	330, 384, 407
BstSLI	GKGCMC	1 cut(s)	1515
BstV1I	GCAGC	4 cut(s)	334, 358, 370, 791
BstV2I	GAAGAC	5 cut(s)	119, 204, 794, 1005, 1380
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
Bsu15I	ATCGAT	3 cut(s)	437, 953, 1103
BsuRI	GGCC	2 cut(s)	264, 328
BsuTUI	ATCGAT	3 cut(s)	437, 953, 1103
BtsCI	GGATG	7 cut(s)	544, 637, 853, 1078, 1228, 1453, 1528
BtsIMutI	CAGTG	1 cut(s)	763
Cac8I	GCNNGC	6 cut(s)	49, 266, 915, 1290, 1699, 1741
CfoI	GCGC	1 cut(s)	646
ClaI	ATCGAT	3 cut(s)	437, 953, 1103
Csp6I	GTAC	4 cut(s)	530, 906, 1281, 1688
CviAII	CATG	4 cut(s)	306, 452, 706, 784
CviQI	GTAC	4 cut(s)	530, 906, 1281, 1688
DpnI	GATC	2 cut(s)	501, 683
DpnII	GATC	2 cut(s)	499, 681
Eam1104I	CTCTTC	2 cut(s)	36, 741
EarI	CTCTTC	2 cut(s)	36, 741
Eco147I	AGGCCT	2 cut(s)	264, 328
Eco31I	GGTCTC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	84
Esp3I	CGTCTC	3 cut(s)	1030, 1180, 1405
FaeI	CATG	4 cut(s)	309, 455, 709, 787
FalI	AAGNNNNNCTT	4 cut(s)	196, 228, 280, 312
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	4 cut(s)	305, 451, 705, 783
FauI	CCCGC	1 cut(s)	676
FblI	GTMKAC	2 cut(s)	15, 567
Fnu4HI	GCNGC	5 cut(s)	9, 348, 372, 384, 780
FokI	GGATG	7 cut(s)	551, 644, 860, 1085, 1235, 1460, 1535
Fsp4HI	GCNGC	5 cut(s)	9, 348, 372, 384, 780
FspBI	CTAG	3 cut(s)	533, 716, 1794
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	5 cut(s)	9, 348, 372, 384, 780
GsaI	CCCAGC	2 cut(s)	154, 588
GsuI	CTGGAG	1 cut(s)	622
HaeIII	GGCC	2 cut(s)	264, 328
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	4 cut(s)	309, 455, 709, 787
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	5 cut(s)	16, 221, 256, 925, 1300
HindII	GTYRAC	5 cut(s)	16, 221, 256, 925, 1300
HindIII	AAGCTT	1 cut(s)	392
HphI	GGTGA	2 cut(s)	16, 650
Hpy166II	GTNNAC	7 cut(s)	16, 221, 256, 568, 739, 925, 1300
Hpy188III	TCNNGA	7 cut(s)	165, 245, 398, 716, 1571, 1673, 1712
Hpy8I	GTNNAC	7 cut(s)	16, 221, 256, 568, 739, 925, 1300
HpyCH4III	ACNGT	3 cut(s)	210, 910, 1285
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	323, 386, 917, 1292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 380
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	4 cut(s)	309, 455, 709, 787
HspAI	GCGC	1 cut(s)	644
Kzo9I	GATC	2 cut(s)	499, 681
LmnI	GCTCC	1 cut(s)	1621
Lsp1109I	GCAGC	4 cut(s)	334, 358, 370, 791
LweI	GCATC	2 cut(s)	550, 631
MaeI	CTAG	3 cut(s)	533, 716, 1794
MaeII	ACGT	1 cut(s)	157
MalI	GATC	2 cut(s)	501, 683
MboI	GATC	2 cut(s)	499, 681
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	1515
MluCI	AATT	5 cut(s)	96, 488, 918, 1329, 1626
MmeI	TCCRAC	4 cut(s)	446, 501, 609, 1326
MroXI	GAANNNNTTC	3 cut(s)	954, 1104, 1329
MseI	TTAA	3 cut(s)	678, 693, 1770
MslI	CAYNNNNRTG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	57, 380
NdeII	GATC	2 cut(s)	499, 681
NlaIII	CATG	4 cut(s)	309, 455, 709, 787
NlaIV	GGNNCC	6 cut(s)	1026, 1062, 1176, 1212, 1401, 1437
NmeAIII	GCCGAG	1 cut(s)	735
NspV	TTCGAA	1 cut(s)	110
PceI	AGGCCT	2 cut(s)	264, 328
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PdmI	GAANNNNTTC	3 cut(s)	954, 1104, 1329
PflMI	CCANNNNNTGG	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	5 cut(s)	10, 349, 373, 385, 781
PshAI	GACNNNNGTC	3 cut(s)	1042, 1192, 1417
Psp6I	CCWGG	1 cut(s)	84
PspFI	CCCAGC	2 cut(s)	150, 584
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	6 cut(s)	1026, 1062, 1176, 1212, 1401, 1437
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	681
RsaI	GTAC	4 cut(s)	531, 907, 1282, 1689
RsaNI	GTAC	4 cut(s)	530, 906, 1281, 1688
RseI	CAYNNNNRTG	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	678, 693, 1770
SatI	GCNGC	5 cut(s)	9, 348, 372, 384, 780
Sau3AI	GATC	2 cut(s)	499, 681
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	1515
SfaNI	GCATC	2 cut(s)	550, 631
SfcI	CTRYAG	3 cut(s)	330, 384, 407
SfuI	TTCGAA	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	304
Sse9I	AATT	5 cut(s)	96, 488, 918, 1329, 1626
SseBI	AGGCCT	2 cut(s)	264, 328
SsiI	CCGC	2 cut(s)	27, 669
SspMI	CTAG	3 cut(s)	533, 716, 1794
StuI	AGGCCT	2 cut(s)	264, 328
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	210, 910, 1285
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	6 cut(s)	15, 110, 437, 953, 1103, 1478
TaqII	GACCGA	1 cut(s)	435
TasI	AATT	5 cut(s)	96, 488, 918, 1329, 1626
TatI	WGTACW	1 cut(s)	1687
Tru1I	TTAA	3 cut(s)	678, 693, 1770
Tru9I	TTAA	3 cut(s)	678, 693, 1770
TscAI	CASTG	1 cut(s)	763
TseI	GCWGC	5 cut(s)	8, 347, 371, 383, 779
TspDTI	ATGAA	8 cut(s)	288, 294, 372, 555, 800, 1160, 1613, 1623
TspGWI	ACGGA	3 cut(s)	1129, 1718, 1769
TspRI	CASTG	1 cut(s)	763
Van91I	CCANNNNNTGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	96, 488
XbaI	TCTAGA	1 cut(s)	715
XmiI	GTMKAC	2 cut(s)	15, 567
XmnI	GAANNNNTTC	3 cut(s)	954, 1104, 1329
XspI	CTAG	3 cut(s)	533, 716, 1794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.