Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004501.1

Orthogroup ID

OG0007892

Physical Location & Seq

Genomic Coordinates Reverse (-)

159 .. 2697

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004501.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggtagccgcttacgaagaagctcgtaacaaacgccttgaagaaaacaagaagaagtttcaggatttgggaatcacccaggtttcaaaaactctgtctgacctcacagcttctgagaagaagccccagcaacgggcttggaagccgaaagcaaagaacaccgctttcgaagtggagccaagacgatccacccgtcagcgaaacccaattcaaacatatgttgatgatgttgacataggccttccaactaggaagaggttgaggtcaagttcatcttcatttggaagctaccttgcaaggcctttggaggaatgccgaatggcttcttatgaagaaaggagtgctgctttcaaagcagccgagcagcttcaagagagtctgcaatctgagaatccatcttttgtcaaatcgatgggtcttccttctaatttctgtgagactcatctcccaaaatcatcggactctgaactgatactagaggatgaagatggaaatgtatatgatgctaaatacattgccaagaggactggtcttagtggtggttggagaggttttgcattggaacacaagttggacgatggtgatgcacttgtgttcgaattggttgaacccacaaggtttaagatctacatagttaaggtgacaaatcaagaacattgcaagaaggacaaagtgaagagtgctggaaagccatcaaaggcagccaagaagcctgaccaagactctaacaaaaaacaaaggtcaaagaaagctaccactgctgaaataatcgacatgaaaacacccccagagcttctaccagagagcccaaaaagtgaagccgtactaccatatagactcaggaagagagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

284

Amino Acids

32.17

Weight (kDa)

9.42

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58280 AT5G58280 AT5G58280
fragaria_vesca	FvH4_3g40930
malus_domestica	MD03G1047900.v1.1
prunus_persica	Prupe.6G038900_v2.0.a1 Prupe.6G038900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073681
rosa_laevigata	RLG00000036404
rosa_multiflora	Rmu_sc0002489.1_g000030 Rmu_sc0004501.1_g000001 Rmu_sc0009248.1_g000006
rosa_roxburghii	Rroxscaffold_1G00007620 Rroxscaffold_5G00354120 Rroxscaffold_7G00170870
rosa_rugosa	Rorug05G0426000
rosa_samantha	Rh4BG336600 Rh4CG352000 Rh5AG482800 Rh5BG503900 Rh5CG527300 Rh5DG516000 Rh6BG387800
rosa_wichuraiana	Rw5G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 162
AclWI	GGATC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	825
AfiI	CCNNNNNNNGG	2 cut(s)	132, 133
AgsI	TTSAA	6 cut(s)	41, 87, 212, 352, 371, 608
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	6 cut(s)	23, 110, 288, 367, 752, 793
AluI	AGCT	6 cut(s)	23, 110, 288, 367, 752, 793
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	180
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	238, 299
ApeKI	GCWGC	4 cut(s)	344, 356, 364, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	67, 593, 652
AsuII	TTCGAA	2 cut(s)	168, 597
BanII	GRGCYC	1 cut(s)	809
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	331, 368, 376, 713
BccI	CCATC	5 cut(s)	403, 406, 482, 572, 700
BceAI	ACGGC	1 cut(s)	806
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	249, 476
BglII	AGATCT	1 cut(s)	624
BisI	GCNGC	5 cut(s)	9, 345, 357, 365, 702
BlsI	GCNGC	5 cut(s)	10, 346, 358, 366, 703
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	493, 574
BpiI	GAAGAC	1 cut(s)	410
Bpu14I	TTCGAA	2 cut(s)	168, 597
Bsa29I	ATCGAT	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 133
Bse1I	ACTGG	1 cut(s)	532
Bse3DI	GCAATG	2 cut(s)	513, 655
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	132, 133
BseMI	GCAATG	2 cut(s)	513, 655
BseMII	CTCAG	3 cut(s)	105, 378, 853
BseNI	ACTGG	1 cut(s)	532
BseXI	GCAGC	4 cut(s)	331, 368, 376, 713
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	2 cut(s)	240, 301
BshVI	ATCGAT	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	132, 133
BsmAI	GTCTC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	240, 301
Bsp119I	TTCGAA	2 cut(s)	168, 597
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	2 cut(s)	185, 624
BspACI	CCGC	2 cut(s)	9, 162
BspANI	GGCC	2 cut(s)	240, 301
BspCNI	CTCAG	3 cut(s)	106, 379, 852
BspDI	ATCGAT	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	2 cut(s)	168, 597
BsrDI	GCAATG	2 cut(s)	513, 655
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	185, 624
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	3 cut(s)	248, 671, 839
BstBI	TTCGAA	2 cut(s)	168, 597
BstDEI	CTNAG	4 cut(s)	114, 387, 533, 839
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	2 cut(s)	188, 627
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	2 cut(s)	185, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 758
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	331, 368, 376, 713
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	240, 301
BsuTUI	ATCGAT	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	756
CaiI	CAGNNNCTG	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	824
CviAII	CATG	1 cut(s)	775
CviQI	GTAC	1 cut(s)	824
DdeI	CTNAG	4 cut(s)	114, 387, 533, 839
DpnI	GATC	2 cut(s)	187, 626
DpnII	GATC	2 cut(s)	185, 624
Eam1104I	CTCTTC	3 cut(s)	248, 671, 839
EarI	CTCTTC	3 cut(s)	248, 671, 839
Eco147I	AGGCCT	2 cut(s)	240, 301
Eco24I	GRGCYC	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	809
FaeI	CATG	1 cut(s)	778
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FatI	CATG	1 cut(s)	774
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	9, 345, 357, 365, 702
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	5 cut(s)	9, 345, 357, 365, 702
FspBI	CTAG	2 cut(s)	249, 476
GluI	GCNGC	5 cut(s)	9, 345, 357, 365, 702
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	240, 301
Hin1II	CATG	1 cut(s)	778
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	7 cut(s)	72, 376, 391, 439, 461, 722, 837
HphI	GGTGA	3 cut(s)	67, 593, 652
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	5 cut(s)	100, 115, 388, 460, 466
Hpy188III	TCNNGA	4 cut(s)	62, 371, 650, 841
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	251, 432, 658
HpyCH4V	TGCA	5 cut(s)	296, 382, 557, 587, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 758
HpyF3I	CTNAG	4 cut(s)	114, 387, 533, 839
Hsp92II	CATG	1 cut(s)	778
Kzo9I	GATC	2 cut(s)	185, 624
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	4 cut(s)	331, 368, 376, 713
LweI	GCATC	2 cut(s)	493, 574
MaeI	CTAG	2 cut(s)	249, 476
MaeIII	GTNAC	2 cut(s)	26, 640
MalI	GATC	2 cut(s)	187, 626
MboI	GATC	2 cut(s)	185, 624
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	3 cut(s)	207, 427, 599
MlyI	GAGTC	5 cut(s)	385, 433, 455, 716, 831
MmeI	TCCRAC	3 cut(s)	269, 524, 552
MnlI	CCTC	7 cut(s)	113, 249, 255, 301, 472, 516, 542
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	621, 636
MspR9I	CCNGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	353, 758
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	2 cut(s)	185, 624
NlaIII	CATG	1 cut(s)	778
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	640
NspV	TTCGAA	2 cut(s)	168, 597
PceI	AGGCCT	2 cut(s)	240, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	72, 391
PkrI	GCNGC	5 cut(s)	10, 346, 358, 366, 703
PleI	GAGTC	5 cut(s)	384, 433, 455, 716, 831
PpsI	GAGTC	5 cut(s)	384, 433, 455, 716, 831
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	1 cut(s)	825
RsaNI	GTAC	1 cut(s)	824
SaqAI	TTAA	2 cut(s)	621, 636
SatI	GCNGC	5 cut(s)	9, 345, 357, 365, 702
Sau3AI	GATC	2 cut(s)	185, 624
SchI	GAGTC	5 cut(s)	385, 433, 455, 716, 831
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	2 cut(s)	493, 574
SfuI	TTCGAA	2 cut(s)	168, 597
Sse9I	AATT	3 cut(s)	207, 427, 599
SseBI	AGGCCT	2 cut(s)	240, 301
SsiI	CCGC	2 cut(s)	9, 162
SspMI	CTAG	2 cut(s)	249, 476
StuI	AGGCCT	2 cut(s)	240, 301
StyD4I	CCNGG	1 cut(s)	78
TaqI	TCGA	4 cut(s)	168, 410, 597, 771
TasI	AATT	3 cut(s)	207, 427, 599
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	72, 391
Tru1I	TTAA	2 cut(s)	621, 636
Tru9I	TTAA	2 cut(s)	621, 636
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	4 cut(s)	344, 356, 364, 701
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	5 cut(s)	261, 267, 345, 498, 791
TspRI	CASTG	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	2 cut(s)	249, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.