Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007892

Physical Location & Seq

Genomic Coordinates Forward (+)

32531822 .. 32543022

Gene Structure 11201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACGCGAACATATGACAAGGCATATTCACTGCCCTGTGGTTTGATTGGTGCTGGAGGAGTTATAAGATACAATGATGGAAACTGGACCTATGGCTTTATGAGAAATCTGGACAATGGTGAAGTACTTCAAGCTGAGCCATGGGGTATAATGACTGGTTTATCCATTGCCAAGGACTTCTCTCTTCCCGGCCTCCTCTACCGTCAAAACTCAAAACACATCTTCCCATCGATCGATCTCTCCTGTGTCTTAAAAACCCGATTTCGTCGCTCCTCCACCACACGCCCCAAACCCAAAGCATTCCCGGACCTTCTTCAACCTCCTTTCGTACTTGATCAATCCGAGTATCGCAAGTTTCGAGAGGTGGGAATTAGTCCTGAAATGATGGCTGTTTATGACAACATGTTCAGGGGTAGCACAGCCCTAGAATCAAAACAAGGTTTTAACAAACTTTCAAATGTCTTTGATAGCAAGAAGGGAAGGGATGAAGTTTTTGAAGCGATCGAGTCTGCAGTGCTACTCGATCCAGCGACTACTATTTTAGAACTACTAATTGATGCGATGAATGATCAAGAGATACCATTTTTGACCTTCCCTCGTACCGAATGGTTCGAGTTGTACGACCGAGCATCTAACTTCGAAAAATTTTCAGCCTTCCAAACATGCCTATACGTACGAGGATACTTAATCCTTGGTACAAAGACAGCACCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

238

Amino Acids

27.1

Weight (kDa)

6.62

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58280 AT5G58280 AT5G58280
fragaria_vesca	FvH4_3g40930
malus_domestica	MD03G1047900.v1.1
prunus_persica	Prupe.6G038900_v2.0.a1 Prupe.6G038900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073681
rosa_laevigata	RLG00000036404
rosa_multiflora	Rmu_sc0002489.1_g000030 Rmu_sc0004501.1_g000001 Rmu_sc0009248.1_g000006
rosa_roxburghii	Rroxscaffold_1G00007620 Rroxscaffold_5G00354120 Rroxscaffold_7G00170870
rosa_rugosa	Rorug05G0426000
rosa_samantha	Rh4BG336600 Rh4CG352000 Rh5AG482800 Rh5BG503900 Rh5CG527300 Rh5DG516000 Rh6BG387800
rosa_wichuraiana	Rw5G044860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AccII	CGCG	1 cut(s)	7
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	644
AfaI	GTAC	6 cut(s)	126, 330, 601, 620, 675, 697
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	131, 317, 456, 497
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	644
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	87, 307
AsuC2I	CCSGG	2 cut(s)	189, 305
AsuHPI	GGTGA	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	639
AvaII	GGWCC	2 cut(s)	87, 307
BccI	CCATC	3 cut(s)	71, 235, 379
BciVI	GTATCC	1 cut(s)	674
BclI	TGATCA	2 cut(s)	334, 568
BcnI	CCSGG	2 cut(s)	189, 305
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	510
BfuI	GTATCC	1 cut(s)	674
BlpI	GCTNAGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	189, 305
Bme18I	GGWCC	2 cut(s)	87, 307
BmgT120I	GGNCC	2 cut(s)	87, 307
BmrFI	CCNGG	2 cut(s)	189, 305
BmsI	GCATC	2 cut(s)	547, 638
BpmI	CTGGAG	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	639
BpuMI	CCSGG	2 cut(s)	189, 305
Bsa29I	ATCGAT	2 cut(s)	230, 234
BsaAI	YACGTR	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	140, 171, 691
Bse1I	ACTGG	2 cut(s)	89, 160
Bse3DI	GCAATG	1 cut(s)	165
BseCI	ATCGAT	2 cut(s)	230, 234
BseDI	CCNNGG	3 cut(s)	140, 171, 691
BseGI	GGATG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	89, 160
BseRI	GAGGAG	3 cut(s)	72, 185, 262
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	3 cut(s)	234, 504, 625
BshFI	GGCC	1 cut(s)	192
BshVI	ATCGAT	2 cut(s)	230, 234
BsiEI	CGRYCG	3 cut(s)	234, 504, 625
BsiSI	CCGG	2 cut(s)	189, 305
BsiWI	CGTACG	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	639
Bsp143I	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	140
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	127
BspDI	ATCGAT	2 cut(s)	230, 234
BspFNI	CGCG	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	89, 160
BssECI	CCNNGG	3 cut(s)	140, 171, 691
BssMI	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
BssT1I	CCWWGG	3 cut(s)	140, 171, 691
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	189
BstBAI	YACGTR	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	639
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	6 cut(s)	234, 238, 337, 504, 526, 571
BstMBI	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
BstMCI	CGRYCG	3 cut(s)	234, 504, 625
BstNSI	RCATGY	2 cut(s)	406, 666
BstSCI	CCNGG	2 cut(s)	187, 303
BstSFI	CTRYAG	1 cut(s)	510
BstSNI	TACGTA	1 cut(s)	673
BstUI	CGCG	1 cut(s)	7
Bsu15I	ATCGAT	2 cut(s)	230, 234
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	2 cut(s)	230, 234
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	2 cut(s)	29, 519
BtsIMutI	CAGTG	2 cut(s)	29, 519
Cfr13I	GGNCC	2 cut(s)	87, 307
ClaI	ATCGAT	2 cut(s)	230, 234
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	6 cut(s)	125, 329, 600, 619, 674, 696
CviAII	CATG	3 cut(s)	141, 403, 663
CviJI	RGCY	7 cut(s)	96, 134, 139, 192, 389, 422, 653
CviKI_1	RGCY	7 cut(s)	96, 134, 139, 192, 389, 422, 653
CviQI	GTAC	6 cut(s)	125, 329, 600, 619, 674, 696
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	6 cut(s)	233, 237, 336, 503, 525, 570
DpnII	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco105I	TACGTA	1 cut(s)	673
Eco130I	CCWWGG	3 cut(s)	140, 171, 691
Eco47I	GGWCC	2 cut(s)	87, 307
EcoT14I	CCWWGG	3 cut(s)	140, 171, 691
ErhI	CCWWGG	3 cut(s)	140, 171, 691
FaeI	CATG	3 cut(s)	144, 406, 666
FatI	CATG	3 cut(s)	140, 402, 662
FauNDI	CATATG	1 cut(s)	13
FbaI	TGATCA	2 cut(s)	334, 568
FokI	GGATG	1 cut(s)	497
FspBI	CTAG	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	189, 305
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	144, 406, 666
HinfI	GANTC	2 cut(s)	428, 506
HpaII	CCGG	2 cut(s)	189, 305
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	4 cut(s)	110, 359, 377, 572
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	5 cut(s)	320, 469, 474, 601, 664
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	1 cut(s)	512
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	3 cut(s)	144, 406, 666
Ksp22I	TGATCA	2 cut(s)	334, 568
Kzo9I	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
LmnI	GCTCC	1 cut(s)	275
LweI	GCATC	2 cut(s)	547, 638
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	672
MalI	GATC	6 cut(s)	233, 237, 336, 503, 525, 570
MboI	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
MboII	GAAGA	3 cut(s)	176, 214, 305
MluCI	AATT	4 cut(s)	369, 552, 644, 712
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	8 cut(s)	50, 203, 206, 283, 330, 355, 606, 671
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	4 cut(s)	251, 444, 686, 715
MspI	CCGG	2 cut(s)	189, 305
MspR9I	CCNGG	2 cut(s)	189, 305
Mva1269I	GAATGC	1 cut(s)	299
MvnI	CGCG	1 cut(s)	7
NciI	CCSGG	2 cut(s)	189, 305
NcoI	CCATGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
NlaIII	CATG	3 cut(s)	144, 406, 666
NspI	RCATGY	2 cut(s)	406, 666
NspV	TTCGAA	1 cut(s)	639
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	355, 618
PctI	GAATGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	428
Pfl23II	CGTACG	1 cut(s)	673
PfoI	TCCNGGA	1 cut(s)	303
Ple19I	CGATCG	2 cut(s)	234, 504
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	673
PscI	ACATGT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	65
PspLI	CGTACG	1 cut(s)	673
PspPI	GGNCC	2 cut(s)	87, 307
PstI	CTGCAG	1 cut(s)	514
PvuI	CGATCG	2 cut(s)	234, 504
RsaI	GTAC	6 cut(s)	126, 330, 601, 620, 675, 697
RsaNI	GTAC	6 cut(s)	125, 329, 600, 619, 674, 696
SaqAI	TTAA	4 cut(s)	251, 444, 686, 715
Sau3AI	GATC	6 cut(s)	231, 235, 334, 501, 523, 568
Sau96I	GGNCC	2 cut(s)	87, 307
ScaI	AGTACT	1 cut(s)	126
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	189, 305
SetI	ASST	8 cut(s)	92, 136, 312, 322, 366, 442, 593, 675
SfaNI	GCATC	2 cut(s)	547, 638
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	639
SinI	GGWCC	2 cut(s)	87, 307
SnaBI	TACGTA	1 cut(s)	673
Sse9I	AATT	4 cut(s)	369, 552, 644, 712
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	187, 303
StyI	CCWWGG	3 cut(s)	140, 171, 691
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	7 cut(s)	230, 234, 358, 504, 522, 612, 639
TaqII	GACCGA	1 cut(s)	639
TasI	AATT	4 cut(s)	369, 552, 644, 712
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	4 cut(s)	251, 444, 686, 715
Tru9I	TTAA	4 cut(s)	251, 444, 686, 715
TscAI	CASTG	2 cut(s)	36, 519
TspDTI	ATGAA	2 cut(s)	501, 578
TspRI	CASTG	2 cut(s)	36, 519
VpaK11BI	GGWCC	2 cut(s)	87, 307
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	2 cut(s)	406, 666
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.