Rmu_sc0002489.1_g000030
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002489.1
Physical Location & Seq
Reverse (-)
90458 .. 90882
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002489.1_g000030.1.cds

Sequence Viewer

Length: 285 bp
atgcacctcctgaatggtggcgatgcacctcctgaatggtggcaaagcaaaattcaggaaaatccggagtatcgcaaatttcgcgacgtgggaattagtcctgacatgatggacatttatgataatatgttcaagggtacctcagctctaggccattgtgtcatgattccttcagctagtatagatgttgaagaggttgtggaggattctgagctaggtaatgaagaaagggggaaaaagagaacaaatgaggacagaccagcaaaagctaataaggacaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.69

Weight (kDa)

4.85

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 64
AcsI RAATTY 2 cut(s) 51, 77
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 139
AgsI TTSAA 2 cut(s) 133, 191
AjiI CACGTC 1 cut(s) 88
AluBI AGCT 4 cut(s) 146, 176, 214, 269
AluI AGCT 4 cut(s) 146, 176, 214, 269
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 2 cut(s) 51, 77
Asp718I GGTACC 1 cut(s) 137
BanI GGYRCC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 103
BfaI CTAG 3 cut(s) 149, 177, 215
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 64
BseMII CTCAG 2 cut(s) 156, 201
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 64
Bsp68I TCGCGA 1 cut(s) 84
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 155, 202
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 142, 210
BstFNI CGCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstUI CGCG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 36
BtrI CACGTC 1 cut(s) 88
BtuMI TCGCGA 1 cut(s) 84
CciI TCATGA 1 cut(s) 162
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 106, 163
CviJI RGCY 5 cut(s) 146, 153, 176, 214, 269
CviKI_1 RGCY 5 cut(s) 146, 153, 176, 214, 269
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 2 cut(s) 142, 210
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 156
FaeI CATG 2 cut(s) 109, 166
FaiI YATR 5 cut(s) 107, 120, 128, 164, 182
FatI CATG 2 cut(s) 105, 162
FspBI CTAG 3 cut(s) 149, 177, 215
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 109, 166
HinfI GANTC 2 cut(s) 166, 206
HpaII CCGG 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 7 cut(s) 10, 32, 56, 65, 83, 101, 163
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 4, 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 2 cut(s) 142, 210
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 109, 166
Kpn2I TCCGGA 1 cut(s) 64
KpnI GGTACC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 23, 41, 45, 78, 114, 273
LweI GCATC 1 cut(s) 13
MaeI CTAG 3 cut(s) 149, 177, 215
MaeII ACGT 1 cut(s) 87
MboII GAAGA 2 cut(s) 203, 236
MluCI AATT 3 cut(s) 51, 77, 93
MnlI CCTC 6 cut(s) 17, 39, 151, 187, 196, 244
MroI TCCGGA 1 cut(s) 64
MspI CCGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 81
NlaIII CATG 2 cut(s) 109, 166
NlaIV GGNNCC 1 cut(s) 139
NruI TCGCGA 1 cut(s) 84
PagI TCATGA 1 cut(s) 162
PfeI GAWTC 2 cut(s) 166, 206
PspN4I GGNNCC 1 cut(s) 139
RruI TCGCGA 1 cut(s) 84
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SfaNI GCATC 1 cut(s) 13
Sse9I AATT 3 cut(s) 51, 77, 93
SspMI CTAG 3 cut(s) 149, 177, 215
TaiI ACGT 1 cut(s) 90
TasI AATT 3 cut(s) 51, 77, 93
TfiI GAWTC 2 cut(s) 166, 206
TspDTI ATGAA 1 cut(s) 237
XapI RAATTY 2 cut(s) 51, 77
XspI CTAG 3 cut(s) 149, 177, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.