FvH4_3g40930

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007892
Physical Location & Seq
Reverse (-)
34448100 .. 34451126
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40930.t1

Sequence Viewer

Length: 885 bp
ATGGTAGCCCCTTACGAAGAAGCTCGTAACAAACGCCTTGAAGAAAACAGGAAGAAATTTCAGGATTTGGGAATCACCCAGATTTCCAAAACTCTGTCTGACCTCACAGCTCCCGAGAAGAAGCCCCAGCGAGTTTGGAAGCCGAAAGCAAAGAATACTGTTTTCGAAGTTGAGCCGAGACGTTCTACTCGTCAGAGAAACCCAATTCAATCATATGTTGATGATGTTGACATAGGTCTTCCGACTAGGAAGAGGTTGAGGTCAAGTTCATCTTCATTCGGAAGCTACCTTGCAAGGCCTTTAGAGGAATGCCGAATGGCTTCTTATGAAGAAAGGAGTGCTGCTTTCAAAGCTGCAGAGCGGCTTCAAGAGAGTCTGCAGTCTGGAAATCCTTCTTTTGTCAAATCGATGGTTCGGTCTCATGTCTATAGCTGTTTTTGGTTGGGTCTTCCTTCTAAATTCTGTGAGGATCATCTCCCGAAATCATCGGACTCTGATATGGTACTAGAGGATGAAGATGGCAATGAATGTGATGCTAAATACTTGTCCAAGAGAACTGGTCTTAGTGGTGGTTGGAGAGGGTTTGCTTTGGAACACAAGTTGGACGATGGTGATGCACTTGTGTTTGAATTGGTTGAACCCACAAGGTTTAAGATCTACATAGTTAAGGTGACAACTCAAGAACATTGCAAGAAGGACAAAGTTAAGAGTGCTGGAAAACCATCAAAGGCAGCCAAGAAGCCTGACCGAGACTCTTCCCAAAAACAAAGGTCGAAGAGAGCTACCACTCCTGAAATAATCGACATGAAGACTCCACCAGAGCTTCTGCCTGAGAGCCCAAAAAGTGAAGCTGTACTGCCATATAGACTTAGAAAGAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

295

Amino Acids

33.54

Weight (kDa)

9.47

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 133 - 221 1.9e-19 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 361
AciI CCGC 1 cut(s) 361
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 2 cut(s) 56, 458
AfaI GTAC 2 cut(s) 504, 855
AgsI TTSAA 6 cut(s) 41, 209, 349, 368, 629, 638
AluBI AGCT 8 cut(s) 23, 110, 285, 353, 432, 782, 823, 851
AluI AGCT 8 cut(s) 23, 110, 285, 353, 432, 782, 823, 851
Alw26I GTCTC 3 cut(s) 172, 423, 744
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 3 cut(s) 341, 353, 731
ApoI RAATTY 2 cut(s) 56, 458
Asp700I GAANNNNTTC 2 cut(s) 319, 391
AsuHPI GGTGA 3 cut(s) 67, 623, 682
AsuII TTCGAA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 839
BbsI GAAGAC 3 cut(s) 230, 440, 815
BbvI GCAGC 3 cut(s) 328, 340, 743
BccI CCATC 4 cut(s) 403, 512, 602, 730
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BcoDI GTCTC 3 cut(s) 172, 423, 744
BfaI CTAG 2 cut(s) 246, 506
BfmI CTRYAG 3 cut(s) 354, 377, 427
BglII AGATCT 1 cut(s) 654
BisI GCNGC 4 cut(s) 342, 354, 362, 732
BlsI GCNGC 4 cut(s) 343, 355, 363, 733
BmeT110I CYCGRG 1 cut(s) 113
BmsI GCATC 2 cut(s) 523, 604
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 3 cut(s) 230, 440, 815
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 663
Bsa29I ATCGAT 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 562
Bse3DI GCAATG 2 cut(s) 529, 685
BseCI ATCGAT 1 cut(s) 407
BseGI GGATG 1 cut(s) 517
BseMI GCAATG 2 cut(s) 529, 685
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 1 cut(s) 562
BseXI GCAGC 3 cut(s) 328, 340, 743
BseYI CCCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 113
BsmAI GTCTC 3 cut(s) 172, 423, 744
BsmBI CGTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 298
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 839
Bsp143I GATC 2 cut(s) 469, 654
BspACI CCGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 823
BspDI ATCGAT 1 cut(s) 407
BspMAI CTGCAG 2 cut(s) 358, 381
BspPI GGATC 1 cut(s) 477
BspT104I TTCGAA 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 423
BsrBI CCGCTC 1 cut(s) 361
BsrDI GCAATG 2 cut(s) 529, 685
BsrI ACTGG 1 cut(s) 562
BssMI GATC 2 cut(s) 469, 654
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 3 cut(s) 245, 760, 770
BstBI TTCGAA 1 cut(s) 165
BstDEI CTNAG 3 cut(s) 563, 831, 869
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 2 cut(s) 472, 657
BstMAI GTCTC 3 cut(s) 172, 423, 744
BstMBI GATC 2 cut(s) 469, 654
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstPAI GACNNNNGTC 1 cut(s) 234
BstSFI CTRYAG 3 cut(s) 354, 377, 427
BstV1I GCAGC 3 cut(s) 328, 340, 743
BstV2I GAAGAC 3 cut(s) 230, 440, 815
BstX2I RGATCY 1 cut(s) 654
BstYI RGATCY 1 cut(s) 654
Bsu15I ATCGAT 1 cut(s) 407
BsuRI GGCC 1 cut(s) 298
BsuTUI ATCGAT 1 cut(s) 407
BtsCI GGATG 1 cut(s) 517
ClaI ATCGAT 1 cut(s) 407
Csp6I GTAC 2 cut(s) 503, 854
CviAII CATG 2 cut(s) 422, 805
CviQI GTAC 2 cut(s) 503, 854
DdeI CTNAG 3 cut(s) 563, 831, 869
DpnI GATC 2 cut(s) 471, 656
DpnII GATC 2 cut(s) 469, 654
Eam1104I CTCTTC 3 cut(s) 245, 760, 770
EarI CTCTTC 3 cut(s) 245, 760, 770
Eco147I AGGCCT 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 839
Eco31I GGTCTC 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 839
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 425, 808
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 2 cut(s) 421, 804
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 342, 354, 362, 732
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 4 cut(s) 342, 354, 362, 732
FspBI CTAG 2 cut(s) 246, 506
GluI GCNGC 4 cut(s) 342, 354, 362, 732
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 298
Hin1II CATG 2 cut(s) 425, 808
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 5 cut(s) 72, 373, 491, 752, 811
HphI GGTGA 3 cut(s) 67, 623, 682
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 6 cut(s) 100, 195, 243, 281, 490, 496
Hpy188III TCNNGA 7 cut(s) 62, 113, 368, 384, 478, 680, 791
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 402, 462, 688
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 293, 356, 379, 617, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 3 cut(s) 563, 831, 869
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 425, 808
Kzo9I GATC 2 cut(s) 469, 654
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 3 cut(s) 328, 340, 743
LweI GCATC 2 cut(s) 523, 604
MaeI CTAG 2 cut(s) 246, 506
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 26, 670
MalI GATC 2 cut(s) 471, 656
MbiI CCGCTC 1 cut(s) 361
MboI GATC 2 cut(s) 469, 654
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 1 cut(s) 839
MluCI AATT 4 cut(s) 56, 204, 458, 629
MlyI GAGTC 4 cut(s) 382, 485, 746, 805
MmeI TCCRAC 3 cut(s) 266, 554, 582
MnlI CCTC 7 cut(s) 113, 246, 252, 298, 460, 502, 572
MroXI GAANNNNTTC 2 cut(s) 319, 391
MseI TTAA 3 cut(s) 651, 666, 705
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeI CATATG 1 cut(s) 214
NdeII GATC 2 cut(s) 469, 654
NlaIII CATG 2 cut(s) 425, 808
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 670
NspV TTCGAA 1 cut(s) 165
PceI AGGCCT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PctI GAATGC 1 cut(s) 314
PdmI GAANNNNTTC 2 cut(s) 319, 391
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 343, 355, 363, 733
PleI GAGTC 4 cut(s) 381, 485, 746, 805
PpsI GAGTC 4 cut(s) 381, 485, 746, 805
PshAI GACNNNNGTC 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 126
PstI CTGCAG 2 cut(s) 358, 381
PsuI RGATCY 1 cut(s) 654
RsaI GTAC 2 cut(s) 504, 855
RsaNI GTAC 2 cut(s) 503, 854
SaqAI TTAA 3 cut(s) 651, 666, 705
SatI GCNGC 4 cut(s) 342, 354, 362, 732
Sau3AI GATC 2 cut(s) 469, 654
SchI GAGTC 4 cut(s) 382, 485, 746, 805
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 2 cut(s) 523, 604
SfcI CTRYAG 3 cut(s) 354, 377, 427
SfuI TTCGAA 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 4 cut(s) 56, 204, 458, 629
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 1 cut(s) 361
SspMI CTAG 2 cut(s) 246, 506
StuI AGGCCT 1 cut(s) 298
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 184
TaqI TCGA 4 cut(s) 165, 407, 773, 801
TaqII GACCGA 2 cut(s) 405, 762
TasI AATT 4 cut(s) 56, 204, 458, 629
TatI WGTACW 1 cut(s) 853
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 3 cut(s) 651, 666, 705
Tru9I TTAA 3 cut(s) 651, 666, 705
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 3 cut(s) 341, 353, 731
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 6 cut(s) 258, 264, 342, 528, 540, 821
XapI RAATTY 2 cut(s) 56, 458
XmnI GAANNNNTTC 2 cut(s) 319, 391
XspI CTAG 2 cut(s) 246, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.