Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Forward (+)

50801089 .. 50810315

Gene Structure 9227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGAGGTCAAGAACTAAAGCGCTTGGTCTTCTGTTAGCAGCACTACTGGTGTCGCTATCCTGGCCTGAGGTAGCACGCGTCAACGGCCAAAGAGATGGAGCCACGATTCCAGTTACCAATGCGAATCCGAATCTGAACGATCTTGACTTAGCTGACGAGAGTCGTTCTCTGGAGATCCACGTTAAAGGTAGTCTTAAGAAGGCCAAAGAGTTGGCGAAGCAAGATTTCACTCTATTGCTGAAGAATCTACTCAAATCTTATGGATTGAAGGCCATTACCGTCGGACATGCTGAAACTGAGAAAGAAGACAAGATGCTTGAGCTATTTGCGAGGAGTTTGATGTCTGACGTGTCTGAGGAGGAAGATGAAGACGTTGCCAATAAGCAAGATGCCGGCAAAGGTTCCAAGCAGAAGAAATTTTCCAAGGCTAGGATTTCGAGGAAGCTAAGGACGACTGAGGAGGAGACGAGTAGGGTCACTAAGTGGCTGAGAGCAAGGGCAAGTATCATCGGACAACATGCCACTGCGTGCATCGATCGGTCACTGAGTTCTAGAACCAACTACATTGTGTGCAAAGCATTGAAGAAGGCCACTGGAGGCATGATCAGTGGGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.63

Weight (kDa)

9.58

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	263
AdeI	CACNNNGTG	2 cut(s)	486, 531
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	432
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	2 cut(s)	79, 351
AgsI	TTSAA	2 cut(s)	271, 586
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	155, 325, 448
AluI	AGCT	3 cut(s)	155, 325, 448
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	172
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	5 cut(s)	65, 88, 204, 273, 591
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	69
BbsI	GAAGAC	3 cut(s)	23, 315, 378
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	3 cut(s)	432, 555, 619
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	103, 406
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	306, 382, 543
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	3 cut(s)	23, 315, 378
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	2 cut(s)	194, 618
Bpu10I	CCTNAGC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	3 cut(s)	54, 113, 601
Bse21I	CCTNAGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	6 cut(s)	60, 291, 348, 450, 482, 539
BseNI	ACTGG	3 cut(s)	54, 113, 601
BseRI	GAGGAG	4 cut(s)	349, 374, 476, 479
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	5 cut(s)	67, 90, 206, 275, 593
BshVI	ATCGAT	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	461
BsmBI	CGTCTC	1 cut(s)	461
BsnI	GGCC	5 cut(s)	67, 90, 206, 275, 593
Bsp143I	GATC	4 cut(s)	142, 177, 538, 606
BspANI	GGCC	5 cut(s)	67, 90, 206, 275, 593
BspCNI	CTCAG	6 cut(s)	61, 292, 349, 451, 483, 540
BspDI	ATCGAT	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	103, 406
BspPI	GGATC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	3 cut(s)	54, 113, 601
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	142, 177, 538, 606
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	79, 397, 532
BstDEI	CTNAG	9 cut(s)	69, 151, 300, 357, 449, 459, 483, 491, 548
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	145, 180, 541, 609
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	142, 177, 538, 606
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 87
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	2 cut(s)	293, 524
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	3 cut(s)	23, 315, 378
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	2 cut(s)	98, 214
BstYI	RGATCY	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	5 cut(s)	67, 90, 206, 275, 593
BsuTUI	ATCGAT	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	4 cut(s)	525, 545, 594, 616
Cac8I	GCNNGC	3 cut(s)	79, 397, 532
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	537
CseI	GACGC	1 cut(s)	70
CviAII	CATG	3 cut(s)	290, 521, 604
DdeI	CTNAG	9 cut(s)	69, 151, 300, 357, 449, 459, 483, 491, 548
DpnI	GATC	4 cut(s)	144, 179, 540, 608
DpnII	GATC	4 cut(s)	142, 177, 538, 606
DraIII	CACNNNGTG	2 cut(s)	486, 531
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	426
Eco47III	AGCGCT	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	3 cut(s)	293, 524, 607
FaiI	YATR	4 cut(s)	264, 291, 522, 605
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	3 cut(s)	289, 520, 603
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	3 cut(s)	432, 555, 619
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	2 cut(s)	194, 618
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	5 cut(s)	67, 90, 206, 275, 593
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	293, 524, 607
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	5 cut(s)	109, 127, 133, 163, 247
HpaII	CCGG	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	6 cut(s)	132, 138, 287, 349, 358, 515
Hpy188III	TCNNGA	4 cut(s)	12, 146, 173, 555
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	196, 265, 583
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	3 cut(s)	183, 351, 375
HpyCH4V	TGCA	2 cut(s)	534, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 87
HpyF3I	CTNAG	9 cut(s)	69, 151, 300, 357, 449, 459, 483, 491, 548
HpySE526I	ACGT	3 cut(s)	183, 351, 375
Hsp92II	CATG	3 cut(s)	293, 524, 607
HspAI	GCGC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	142, 177, 538, 606
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	8 cut(s)	35, 49, 76, 81, 126, 158, 409, 582
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	3 cut(s)	306, 382, 543
MaeI	CTAG	3 cut(s)	432, 555, 619
MaeII	ACGT	3 cut(s)	183, 351, 375
MaeIII	GTNAC	3 cut(s)	115, 478, 543
MalI	GATC	4 cut(s)	144, 179, 540, 608
MboI	GATC	4 cut(s)	142, 177, 538, 606
MboII	GAAGA	7 cut(s)	23, 256, 320, 377, 383, 427, 598
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	1 cut(s)	419
MluI	ACGCGT	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	64, 327, 352, 355, 435, 454, 457, 593
MroNI	GCCGGC	1 cut(s)	395
MseI	TTAA	2 cut(s)	186, 198
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	64, 87
NaeI	GCCGGC	1 cut(s)	397
NdeII	GATC	4 cut(s)	142, 177, 538, 606
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	3 cut(s)	293, 524, 607
NlaIV	GGNNCC	2 cut(s)	103, 406
NmuCI	GTSAC	2 cut(s)	478, 543
NspI	RCATGY	2 cut(s)	293, 524
PdiI	GCCGGC	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	109, 127, 133, 247
PkrI	GCNGC	1 cut(s)	43
Ple19I	CGATCG	1 cut(s)	541
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PshAI	GACNNNNGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	103, 406
PsuI	RGATCY	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	541
SaqAI	TTAA	2 cut(s)	186, 198
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	4 cut(s)	142, 177, 538, 606
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	64
SfaNI	GCATC	3 cut(s)	306, 382, 543
SmlI	CTYRAG	2 cut(s)	197, 320
SmoI	CTYRAG	2 cut(s)	197, 320
Sse9I	AATT	1 cut(s)	419
SspMI	CTAG	3 cut(s)	432, 555, 619
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	3 cut(s)	186, 354, 378
TaqI	TCGA	2 cut(s)	440, 537
TaqII	GACCGA	1 cut(s)	531
TasI	AATT	1 cut(s)	419
TfiI	GAWTC	4 cut(s)	109, 127, 133, 247
Tru1I	TTAA	2 cut(s)	186, 198
Tru9I	TTAA	2 cut(s)	186, 198
TscAI	CASTG	4 cut(s)	532, 552, 601, 616
TseFI	GTSAC	2 cut(s)	478, 543
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	478, 543
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	4 cut(s)	532, 552, 601, 616
Vha464I	CTTAAG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	419
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	2 cut(s)	293, 524
XspI	CTAG	3 cut(s)	432, 555, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.