Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Forward (+)

56721300 .. 56730337

Gene Structure 9038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG305900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGAGGTCAAGAACTAAAGCGCTTGGTCTTCTGTTAGCAGCACTACTGGTGTCGCTATCCTGGCCTGAGGTAGCACGCGTCAACGGCCAAAGAGATGGAGCCACGATTCCAGTTACTAATGCGAATCCGAATCTGAACGATCTTGACTTAGCTGAGGAGAGTCGTTCTCTGGAGATCCACGTTAAAGGTAGTCTTAAGAAGGCCAAAGAGTTGGCGAAGAAAGATTTCACTCTATTGCTGAAGAATCTACTCAAATCTTATGGATTGAAGGCCATTACCGTCGAACATGCTGAAACTGAGAAAGAAGACAGGATGCTTGAGCTATTTGCGAGGAGTTTGATGTCTGACGTGTCTGAGGAGGAAGATGAAGACGTCGTCAATAAGCAAGATGCCGACAAAGGTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.15

Weight (kDa)

5.49

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AccII	CGCG	1 cut(s)	81
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	375
AfeI	AGCGCT	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	2 cut(s)	79, 351
AgsI	TTSAA	1 cut(s)	271
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	155, 325
AluI	AGCT	2 cut(s)	155, 325
AlwI	GGATC	1 cut(s)	172
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	4 cut(s)	65, 88, 204, 273
ApeKI	GCWGC	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	69
BbsI	GAAGAC	3 cut(s)	23, 315, 378
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	103, 406
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	306, 382
BpiI	GAAGAC	3 cut(s)	23, 315, 378
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	54, 113
Bse21I	CCTNAGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	60, 147, 291, 348
BseNI	ACTGG	2 cut(s)	54, 113
BseRI	GAGGAG	3 cut(s)	173, 349, 374
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	4 cut(s)	67, 90, 206, 275
BsnI	GGCC	4 cut(s)	67, 90, 206, 275
Bsp143I	GATC	2 cut(s)	142, 177
BspANI	GGCC	4 cut(s)	67, 90, 206, 275
BspCNI	CTCAG	4 cut(s)	61, 148, 292, 349
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	103, 406
BspPI	GGATC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	54, 113
BssMI	GATC	2 cut(s)	142, 177
BssNI	GRCGYC	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	375
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	5 cut(s)	69, 151, 156, 300, 357
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	145, 180
BstMBI	GATC	2 cut(s)	142, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 87
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	3 cut(s)	23, 315, 378
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	2 cut(s)	98, 214
BstYI	RGATCY	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	4 cut(s)	67, 90, 206, 275
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	25
CseI	GACGC	1 cut(s)	70
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	7 cut(s)	67, 90, 104, 155, 206, 275, 325
CviKI_1	RGCY	7 cut(s)	67, 90, 104, 155, 206, 275, 325
DdeI	CTNAG	5 cut(s)	69, 151, 156, 300, 357
DpnI	GATC	2 cut(s)	144, 179
DpnII	GATC	2 cut(s)	142, 177
EaeI	YGGCCR	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	62
FaeI	CATG	1 cut(s)	293
FaiI	YATR	2 cut(s)	264, 291
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	42
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	67, 90, 206, 275
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	5 cut(s)	109, 127, 133, 163, 247
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	132, 138, 349, 358
Hpy188III	TCNNGA	3 cut(s)	12, 146, 173
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	287, 380
HpyAV	CCTTC	2 cut(s)	196, 265
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	3 cut(s)	183, 351, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 87
HpyF3I	CTNAG	5 cut(s)	69, 151, 156, 300, 357
HpySE526I	ACGT	3 cut(s)	183, 351, 375
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	142, 177
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	35, 49, 76, 81, 126, 158, 298
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	2 cut(s)	306, 382
MaeII	ACGT	3 cut(s)	183, 351, 375
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	144, 179
MboI	GATC	2 cut(s)	142, 177
MboII	GAAGA	6 cut(s)	23, 232, 256, 320, 377, 383
MflI	RGATCY	1 cut(s)	177
MluI	ACGCGT	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	64, 151, 327, 352, 355
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	186, 198
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	64, 87
NdeII	GATC	2 cut(s)	142, 177
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	103, 406
NspI	RCATGY	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	4 cut(s)	109, 127, 133, 247
PflFI	GACNNNGTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	103, 406
PsuI	RGATCY	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	186, 198
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	142, 177
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	9 cut(s)	11, 75, 157, 186, 193, 327, 354, 378, 406
SfaNI	GCATC	2 cut(s)	306, 382
SmlI	CTYRAG	2 cut(s)	197, 320
SmoI	CTYRAG	2 cut(s)	197, 320
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	3 cut(s)	186, 354, 378
TaqI	TCGA	1 cut(s)	285
TfiI	GAWTC	4 cut(s)	109, 127, 133, 247
Tru1I	TTAA	2 cut(s)	186, 198
Tru9I	TTAA	2 cut(s)	186, 198
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	377
Vha464I	CTTAAG	1 cut(s)	197
XceI	RCATGY	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.