Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000986.1

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Reverse (-)

170482 .. 170727

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000986.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgagtaacctgaacagactagacttcgctccattgggaacaactggctctggatatcacaaatgggttcatgatgtccgccaacatctcaaggccgatggaatcctggatacgattctcgagcctagccaggacatgctaactgtcgagcaagctcaagctttggaagaaaatagagcagccttggaggcaaataaggccaaagccatcattctaatgactcgtcatatggatgattctctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

81

Amino Acids

9.06

Weight (kDa)

5.39

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	105, 129
AluBI	AGCT	2 cut(s)	155, 161
AluI	AGCT	2 cut(s)	155, 161
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	93, 198
ApeKI	GCWGC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	92, 215
BciT130I	CCWGG	2 cut(s)	107, 131
BciVI	GTATCC	1 cut(s)	103
BfaI	CTAG	3 cut(s)	20, 126, 244
BfuI	GTATCC	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	107, 131
BmeT110I	CYCGRG	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	107, 131
BpuEI	CTTGAG	2 cut(s)	74, 141
BsaJI	CCNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	107, 131
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	191
BshFI	GGCC	2 cut(s)	95, 200
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	2 cut(s)	95, 200
BsoBI	CYCGRG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	95, 200
BspHI	TCATGA	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	107, 131
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstNI	CCWGG	2 cut(s)	107, 131
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	105, 129
BstV1I	GCAGC	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	95, 200
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	70
CviAII	CATG	2 cut(s)	71, 136
CviJI	RGCY	9 cut(s)	48, 95, 124, 129, 155, 161, 182, 200, 206
CviKI_1	RGCY	9 cut(s)	48, 95, 124, 129, 155, 161, 182, 200, 206
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	183
Eco32I	GATATC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	105, 129
EcoRV	GATATC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	74, 139
FaiI	YATR	4 cut(s)	72, 137, 228, 230
FatI	CATG	2 cut(s)	70, 135
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	3 cut(s)	20, 126, 244
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	95, 200
Hin1II	CATG	2 cut(s)	74, 139
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	102, 115, 220, 236
Hpy188III	TCNNGA	3 cut(s)	51, 71, 119
HpyCH4III	ACNGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
Hsp92II	CATG	2 cut(s)	74, 139
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	23, 30, 36, 92, 116, 119, 143
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	3 cut(s)	20, 126, 244
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	1 cut(s)	181
MslI	CAYNNNNRTG	2 cut(s)	215, 231
MspR9I	CCNGG	2 cut(s)	107, 131
MvaI	CCWGG	2 cut(s)	107, 131
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NdeI	CATATG	1 cut(s)	228
NlaIII	CATG	2 cut(s)	74, 139
NspI	RCATGY	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	102, 115, 236
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	105, 129
PspGI	CCWGG	2 cut(s)	105, 129
RseI	CAYNNNNRTG	2 cut(s)	215, 231
SatI	GCNGC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	107, 131
SetI	ASST	3 cut(s)	12, 157, 163
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	215, 231
SmlI	CTYRAG	3 cut(s)	89, 119, 156
SmoI	CTYRAG	3 cut(s)	89, 119, 156
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	3 cut(s)	20, 126, 244
StyD4I	CCNGG	2 cut(s)	105, 129
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	120, 147
TfiI	GAWTC	3 cut(s)	102, 115, 236
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	59
XceI	RCATGY	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	3 cut(s)	20, 126, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.