No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000007141 |
| rosa_multiflora | Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00370290 |
| rosa_samantha | Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 244 |
| AccII | CGCG | 1 cut(s) | 131 |
| AciI | CCGC | 1 cut(s) | 131 |
| AcoI | YGGCCR | 1 cut(s) | 51 |
| AcsI | RAATTY | 1 cut(s) | 404 |
| AcuI | CTGAAG | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 244 |
| AflII | CTTAAG | 1 cut(s) | 227 |
| AgsI | TTSAA | 2 cut(s) | 124, 301 |
| AluBI | AGCT | 3 cut(s) | 20, 185, 355 |
| AluI | AGCT | 3 cut(s) | 20, 185, 355 |
| Ama87I | CYCGRG | 1 cut(s) | 92 |
| AoxI | GGCC | 3 cut(s) | 51, 234, 303 |
| ApeKI | GCWGC | 1 cut(s) | 394 |
| ApoI | RAATTY | 1 cut(s) | 404 |
| AspS9I | GGNCC | 1 cut(s) | 235 |
| AsuHPI | GGTGA | 1 cut(s) | 259 |
| AvaI | CYCGRG | 1 cut(s) | 92 |
| BalI | TGGCCA | 1 cut(s) | 53 |
| BbvI | GCAGC | 1 cut(s) | 406 |
| BfrI | CTTAAG | 1 cut(s) | 227 |
| BisI | GCNGC | 1 cut(s) | 395 |
| BlsI | GCNGC | 1 cut(s) | 396 |
| BmeT110I | CYCGRG | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 1 cut(s) | 235 |
| BmrI | ACTGGG | 1 cut(s) | 462 |
| BmsI | GCATC | 3 cut(s) | 310, 336, 454 |
| BmuI | ACTGGG | 1 cut(s) | 462 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 184, 216 |
| BpuEI | CTTGAG | 2 cut(s) | 96, 371 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 244 |
| Bse1I | ACTGG | 3 cut(s) | 143, 150, 457 |
| BseGI | GGATG | 2 cut(s) | 207, 351 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 244 |
| BseMII | CTCAG | 2 cut(s) | 177, 321 |
| BseNI | ACTGG | 3 cut(s) | 143, 150, 457 |
| BseRI | GAGGAG | 1 cut(s) | 379 |
| BseXI | GCAGC | 1 cut(s) | 406 |
| Bsh1236I | CGCG | 1 cut(s) | 131 |
| BshFI | GGCC | 3 cut(s) | 53, 236, 305 |
| BsiHKCI | CYCGRG | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 244 |
| BsnI | GGCC | 3 cut(s) | 53, 236, 305 |
| BsoBI | CYCGRG | 1 cut(s) | 92 |
| Bsp143I | GATC | 2 cut(s) | 172, 372 |
| BspACI | CCGC | 1 cut(s) | 131 |
| BspANI | GGCC | 3 cut(s) | 53, 236, 305 |
| BspCNI | CTCAG | 2 cut(s) | 178, 322 |
| BspFNI | CGCG | 1 cut(s) | 131 |
| BspTI | CTTAAG | 1 cut(s) | 227 |
| BsrI | ACTGG | 3 cut(s) | 143, 150, 457 |
| BssMI | GATC | 2 cut(s) | 172, 372 |
| Bst4CI | ACNGT | 1 cut(s) | 313 |
| Bst6I | CTCTTC | 1 cut(s) | 185 |
| BstAFI | CTTAAG | 1 cut(s) | 227 |
| BstDEI | CTNAG | 3 cut(s) | 186, 330, 468 |
| BstF5I | GGATG | 2 cut(s) | 207, 351 |
| BstFNI | CGCG | 1 cut(s) | 131 |
| BstKTI | GATC | 2 cut(s) | 175, 375 |
| BstMBI | GATC | 2 cut(s) | 172, 372 |
| BstUI | CGCG | 1 cut(s) | 131 |
| BstV1I | GCAGC | 1 cut(s) | 406 |
| BsuRI | GGCC | 3 cut(s) | 53, 236, 305 |
| BtsCI | GGATG | 2 cut(s) | 207, 351 |
| BtsIMutI | CAGTG | 2 cut(s) | 157, 450 |
| Cfr13I | GGNCC | 1 cut(s) | 235 |
| CviAII | CATG | 1 cut(s) | 440 |
| CviJI | RGCY | 9 cut(s) | 20, 38, 53, 116, 185, 222, 236, 305, 355 |
| CviKI_1 | RGCY | 9 cut(s) | 20, 38, 53, 116, 185, 222, 236, 305, 355 |
| DdeI | CTNAG | 3 cut(s) | 186, 330, 468 |
| DpnI | GATC | 2 cut(s) | 174, 374 |
| DpnII | GATC | 2 cut(s) | 172, 372 |
| DraI | TTTAAA | 1 cut(s) | 30 |
| EaeI | YGGCCR | 1 cut(s) | 51 |
| Eam1104I | CTCTTC | 1 cut(s) | 185 |
| EarI | CTCTTC | 1 cut(s) | 185 |
| Eco57I | CTGAAG | 1 cut(s) | 293 |
| Eco88I | CYCGRG | 1 cut(s) | 92 |
| FaeI | CATG | 1 cut(s) | 443 |
| FaiI | YATR | 5 cut(s) | 138, 182, 294, 392, 441 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 9, 41, 210, 242 |
| FatI | CATG | 1 cut(s) | 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 395 |
| FokI | GGATG | 2 cut(s) | 194, 358 |
| Fsp4HI | GCNGC | 1 cut(s) | 395 |
| GluI | GCNGC | 1 cut(s) | 395 |
| HaeIII | GGCC | 3 cut(s) | 53, 236, 305 |
| Hin1II | CATG | 1 cut(s) | 443 |
| HinfI | GANTC | 5 cut(s) | 107, 157, 163, 193, 277 |
| HphI | GGTGA | 1 cut(s) | 259 |
| Hpy188I | TCNGA | 2 cut(s) | 162, 168 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 176 |
| Hpy99I | CGWCG | 1 cut(s) | 380 |
| HpyAV | CCTTC | 2 cut(s) | 226, 295 |
| HpyCH4III | ACNGT | 1 cut(s) | 313 |
| HpyCH4IV | ACGT | 1 cut(s) | 213 |
| HpyCH4V | TGCA | 3 cut(s) | 136, 394, 412 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 330, 468 |
| HpySE526I | ACGT | 1 cut(s) | 213 |
| Hsp92II | CATG | 1 cut(s) | 443 |
| Kzo9I | GATC | 2 cut(s) | 172, 372 |
| LmnI | GCTCC | 1 cut(s) | 25 |
| LpnPI | CCDG | 5 cut(s) | 156, 163, 328, 435, 438 |
| Lsp1109I | GCAGC | 1 cut(s) | 406 |
| LweI | GCATC | 3 cut(s) | 310, 336, 454 |
| MaeII | ACGT | 1 cut(s) | 213 |
| MalI | GATC | 2 cut(s) | 174, 374 |
| MboI | GATC | 2 cut(s) | 172, 372 |
| MboII | GAAGA | 3 cut(s) | 202, 286, 437 |
| MfeI | CAATTG | 1 cut(s) | 266 |
| MlsI | TGGCCA | 1 cut(s) | 53 |
| MluCI | AATT | 4 cut(s) | 47, 98, 266, 404 |
| MluNI | TGGCCA | 1 cut(s) | 53 |
| MlyI | GAGTC | 1 cut(s) | 202 |
| MnlI | CCTC | 3 cut(s) | 28, 357, 373 |
| Mox20I | TGGCCA | 1 cut(s) | 53 |
| MscI | TGGCCA | 1 cut(s) | 53 |
| MseI | TTAA | 4 cut(s) | 29, 102, 216, 228 |
| Msp20I | TGGCCA | 1 cut(s) | 53 |
| MspCI | CTTAAG | 1 cut(s) | 227 |
| MunI | CAATTG | 1 cut(s) | 266 |
| MvnI | CGCG | 1 cut(s) | 131 |
| NdeII | GATC | 2 cut(s) | 172, 372 |
| NlaIII | CATG | 1 cut(s) | 443 |
| PaeR7I | CTCGAG | 1 cut(s) | 92 |
| PfeI | GAWTC | 4 cut(s) | 107, 157, 163, 277 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 244 |
| PkrI | GCNGC | 1 cut(s) | 396 |
| PleI | GAGTC | 1 cut(s) | 201 |
| PpsI | GAGTC | 1 cut(s) | 201 |
| PspPI | GGNCC | 1 cut(s) | 235 |
| SaqAI | TTAA | 4 cut(s) | 29, 102, 216, 228 |
| SatI | GCNGC | 1 cut(s) | 395 |
| Sau3AI | GATC | 2 cut(s) | 172, 372 |
| Sau96I | GGNCC | 1 cut(s) | 235 |
| SchI | GAGTC | 1 cut(s) | 202 |
| SetI | ASST | 4 cut(s) | 22, 187, 216, 357 |
| SfaNI | GCATC | 3 cut(s) | 310, 336, 454 |
| Sfr274I | CTCGAG | 1 cut(s) | 92 |
| SlaI | CTCGAG | 1 cut(s) | 92 |
| SmlI | CTYRAG | 4 cut(s) | 92, 111, 227, 350 |
| SmoI | CTYRAG | 4 cut(s) | 92, 111, 227, 350 |
| Sse9I | AATT | 4 cut(s) | 47, 98, 266, 404 |
| SsiI | CCGC | 1 cut(s) | 131 |
| TaaI | ACNGT | 1 cut(s) | 313 |
| TaiI | ACGT | 1 cut(s) | 216 |
| TaqI | TCGA | 3 cut(s) | 93, 177, 378 |
| TasI | AATT | 4 cut(s) | 47, 98, 266, 404 |
| TfiI | GAWTC | 4 cut(s) | 107, 157, 163, 277 |
| Tru1I | TTAA | 4 cut(s) | 29, 102, 216, 228 |
| Tru9I | TTAA | 4 cut(s) | 29, 102, 216, 228 |
| TscAI | CASTG | 2 cut(s) | 157, 457 |
| TseI | GCWGC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 1 cut(s) | 120 |
| TspRI | CASTG | 2 cut(s) | 157, 457 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 244 |
| Vha464I | CTTAAG | 1 cut(s) | 227 |
| XapI | RAATTY | 1 cut(s) | 404 |
| XhoI | CTCGAG | 1 cut(s) | 92 |