Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Forward (+)

59894369 .. 59901050

Gene Structure 6682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATGCAGAAGCAGAAGCGTCTGGATATTCTGACAGCAGGATGCCGCCGGGATAGCACTGCGACCACCGGAGGCGGAGCCGCAAATAATGACGGGCAGAGGCCCGACCTAGGGTTTTCTGGAACGATATGCTGTCTTAAGGAGGCCAAAGAGTTGGCGAACCAAGATTTCACTCTATTGTTGAAGAATCTACTCAAATCTTGTGGATTGAAGGCCATTACCATCGGAGATGCTGAAGCTGAGAAAGATGACAGGATGCTTGAGCTGTTTGCGAGGAGTTTGATGTCCGACGCGTCTGAGGAGGAAGATGAAGACGCTGCCAATAAGCAAGATGCCAGCAAAGAAGCACTGTTGGAAGAGACTAGAGGCTTGCAGGATGCTTTGAAGGATTCTTGCAAAGTCAATGGTGTGGATGGTGATGGTGAAGCTCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

4.53

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	293
AciI	CCGC	3 cut(s)	46, 75, 81
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	110, 111
AflII	CTTAAG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	184, 211, 385
AluBI	AGCT	3 cut(s)	239, 265, 428
AluI	AGCT	3 cut(s)	239, 265, 428
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	101, 144, 213
ApeKI	GCWGC	1 cut(s)	317
AspA2I	CCTAGG	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	428, 434
AvrII	CCTAGG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	230, 407, 413
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	2 cut(s)	110, 363
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	46, 81, 318
BlnI	CCTAGG	1 cut(s)	109
BlsI	GCNGC	3 cut(s)	47, 82, 319
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	5 cut(s)	32, 220, 246, 322, 367
BpiI	GAAGAC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 111
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	4 cut(s)	47, 261, 382, 418
BseLI	CCNNNNNNNGG	2 cut(s)	110, 111
BseMII	CTCAG	2 cut(s)	231, 288
BseRI	GAGGAG	2 cut(s)	289, 314
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	103, 146, 215
BsiSI	CCGG	2 cut(s)	49, 69
BslI	CCNNNNNNNGG	2 cut(s)	110, 111
BsmAI	GTCTC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	103, 146, 215
BspACI	CCGC	3 cut(s)	46, 75, 81
BspANI	GGCC	3 cut(s)	103, 146, 215
BspCNI	CTCAG	2 cut(s)	232, 289
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	337, 371
BstDEI	CTNAG	2 cut(s)	240, 297
BstF5I	GGATG	4 cut(s)	47, 261, 382, 418
BstFNI	CGCG	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	103, 146, 215
BtsCI	GGATG	4 cut(s)	47, 261, 382, 418
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 347
Cac8I	GCNNGC	2 cut(s)	337, 371
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	4 cut(s)	8, 282, 299, 323
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviJI	RGCY	8 cut(s)	80, 103, 146, 215, 239, 265, 369, 428
CviKI_1	RGCY	8 cut(s)	80, 103, 146, 215, 239, 265, 369, 428
DdeI	CTNAG	2 cut(s)	240, 297
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaiI	YATR	2 cut(s)	130, 436
Fnu4HI	GCNGC	3 cut(s)	46, 81, 318
FokI	GGATG	4 cut(s)	54, 268, 389, 425
Fsp4HI	GCNGC	3 cut(s)	46, 81, 318
FspBI	CTAG	2 cut(s)	110, 363
GluI	GCNGC	3 cut(s)	46, 81, 318
HaeIII	GGCC	3 cut(s)	103, 146, 215
HapII	CCGG	2 cut(s)	49, 69
HgaI	GACGC	4 cut(s)	8, 282, 299, 323
HinfI	GANTC	2 cut(s)	187, 389
HpaII	CCGG	2 cut(s)	49, 69
HphI	GGTGA	2 cut(s)	428, 434
Hpy188I	TCNGA	4 cut(s)	33, 227, 289, 298
Hpy188III	TCNNGA	2 cut(s)	23, 120
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	205, 379
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	7, 373, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	240, 297
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	8, 24, 62, 82, 105, 238, 349, 359
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	5 cut(s)	32, 220, 246, 322, 367
MaeI	CTAG	2 cut(s)	110, 363
MboII	GAAGA	4 cut(s)	196, 317, 323, 368
MluI	ACGCGT	1 cut(s)	291
MmeI	TCCRAC	2 cut(s)	312, 333
MnlI	CCTC	7 cut(s)	65, 93, 136, 267, 292, 295, 359
MseI	TTAA	1 cut(s)	138
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	2 cut(s)	49, 69
MspR9I	CCNGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	54
NciI	CCSGG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	187, 389
PkrI	GCNGC	3 cut(s)	47, 82, 319
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	46, 81, 318
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	4 cut(s)	111, 241, 267, 430
SfaNI	GCATC	5 cut(s)	32, 220, 246, 322, 367
SmlI	CTYRAG	2 cut(s)	137, 260
SmoI	CTYRAG	2 cut(s)	137, 260
SsiI	CCGC	3 cut(s)	46, 75, 81
SspMI	CTAG	2 cut(s)	110, 363
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	351
TauI	GCSGC	2 cut(s)	48, 83
TfiI	GAWTC	2 cut(s)	187, 389
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	64, 354
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	2 cut(s)	64, 354
Vha464I	CTTAAG	1 cut(s)	137
XmaJI	CCTAGG	1 cut(s)	109
XspI	CTAG	2 cut(s)	110, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.