Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Forward (+)

51928623 .. 51939833

Gene Structure 11211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTAACCTGAACAAATTGGACTTCGCTCCATTGGGAACAATTGGCTCTGGATATCACAAGTGGGTTCGTGATATTCGCCGGCATCTCAAGACCGATGGAATCCTGGATACGATTCTCGAGCCTAACCAGGACGTGCTAGCTGTTGGTAGCATCGTTTGCGGAAGTTATCCAAACTCCCGAACCATAGTCATTAGGGGGAGATGCGGACATCGGGGAGATGTTTACATGTTGCGGCATCGCTGTCCCGATTGGAACAGGTTGCATTTCCATGAGGATTGTTACCTTGCTCATCAACTATTGGCTATTGTGGACCCCGCCTCGGGAGATCAGCCACTCTACAACAAGGACAAGACCGTCATTGTCACCATACCATCGACTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGCGGTGCGATTCCGGTTGCCAATGCGAATCCGAATCGAACGATCTCGACATAGGCGAGGAGAGTCATTCTCTGGAGATCCACGTTAAAGGCAGTCTTAAGAAGGCCAAAGAGTTGGCGAAGCAAGATTTCACTCTATTGCTAAAGAATCTACTCAAATCTTGTGGATTGAAGACCATTACCGTTGGACATGCTAAAGGCGAGAAAGATGACGGGATGCTTGAGCTGTTTGCAAGGAGTTTGATGTCCGAAGCGTACGAGGAGGAAGATGAAGATGCCGCCAATAAGCAAGATGTTGGCAAAGACACCGGAAATCCGGACACCGGTTCGGTCGCTGGATTCTCGTCACGAGTCGGCGGCGGCCACTGGTCACGGGAGTCCGGCAAGGTATCCGACGACTTCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

275

Amino Acids

30.44

Weight (kDa)

5.66

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccII	CGCG	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	733
AciI	CCGC	8 cut(s)	162, 207, 235, 318, 421, 696, 774, 777
AclWI	GGATC	2 cut(s)	383, 490
AcoI	YGGCCR	1 cut(s)	778
AfaI	GTAC	1 cut(s)	674
AfiI	CCNNNNNNNGG	3 cut(s)	322, 323, 740
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	228
AgeI	ACCGGT	1 cut(s)	740
AgsI	TTSAA	1 cut(s)	589
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	105, 129
AluBI	AGCT	2 cut(s)	143, 643
AluI	AGCT	2 cut(s)	143, 643
AlwI	GGATC	2 cut(s)	383, 490
Ama87I	CYCGRG	2 cut(s)	119, 322
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	2 cut(s)	522, 778
AsiGI	ACCGGT	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	139
AvaI	CYCGRG	2 cut(s)	119, 322
AvaII	GGWCC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	596
BccI	CCATC	2 cut(s)	92, 382
BciT130I	CCWGG	2 cut(s)	107, 131
BciVI	GTATCC	2 cut(s)	103, 817
BfaI	CTAG	1 cut(s)	140
BfrI	CTTAAG	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	103, 817
BisI	GCNGC	4 cut(s)	236, 696, 775, 778
BlsI	GCNGC	4 cut(s)	237, 697, 776, 779
Bme1390I	CCNGG	2 cut(s)	107, 131
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	2 cut(s)	119, 322
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	2 cut(s)	107, 131
BmsI	GCATC	6 cut(s)	94, 162, 194, 247, 624, 682
BmtI	GCTAGC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	596
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BpmI	CTGGAG	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	74, 659
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	4 cut(s)	431, 725, 733, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 323, 740
Bse118I	RCCGGY	2 cut(s)	81, 740
Bse1I	ACTGG	1 cut(s)	788
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	107, 131
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	3 cut(s)	322, 323, 740
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	2 cut(s)	491, 692
Bsh1236I	CGCG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	750
BshFI	GGCC	2 cut(s)	524, 780
BshTI	ACCGGT	1 cut(s)	740
BsiEI	CGRYCG	1 cut(s)	750
BsiHKCI	CYCGRG	2 cut(s)	119, 322
BsiSI	CCGG	6 cut(s)	82, 432, 726, 734, 741, 798
BsiWI	CGTACG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	322, 323, 740
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	524, 780
BsoBI	CYCGRG	2 cut(s)	119, 322
Bsp13I	TCCGGA	1 cut(s)	733
Bsp143I	GATC	4 cut(s)	328, 388, 460, 495
BspACI	CCGC	8 cut(s)	162, 207, 235, 318, 421, 696, 774, 777
BspANI	GGCC	2 cut(s)	524, 780
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	315
BspOI	GCTAGC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	383, 490
BspTI	CTTAAG	1 cut(s)	515
BsrFI	RCCGGY	2 cut(s)	81, 740
BsrI	ACTGG	1 cut(s)	788
BssAI	RCCGGY	2 cut(s)	81, 740
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	328, 388, 460, 495
BssSI	CACGAG	1 cut(s)	765
Bst2BI	CACGAG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	107, 131
Bst4CI	ACNGT	2 cut(s)	358, 601
BstAFI	CTTAAG	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	83, 141
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	405
BstKTI	GATC	4 cut(s)	331, 391, 463, 498
BstMBI	GATC	4 cut(s)	328, 388, 460, 495
BstMCI	CGRYCG	1 cut(s)	750
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	107, 131
BstNSI	RCATGY	2 cut(s)	232, 611
BstSCI	CCNGG	2 cut(s)	105, 129
BstUI	CGCG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	495
BsuI	GTATCC	2 cut(s)	103, 817
BsuRI	GGCC	2 cut(s)	524, 780
BtgZI	GCGATG	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	83, 141
Cfr10I	RCCGGY	2 cut(s)	81, 740
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	673
CspAI	ACCGGT	1 cut(s)	740
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	3 cut(s)	229, 272, 608
CviJI	RGCY	9 cut(s)	48, 124, 143, 305, 334, 410, 524, 643, 780
CviKI_1	RGCY	9 cut(s)	48, 124, 143, 305, 334, 410, 524, 643, 780
CviQI	GTAC	1 cut(s)	673
DpnI	GATC	4 cut(s)	330, 390, 462, 497
DpnII	GATC	4 cut(s)	328, 388, 460, 495
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	778
Eco32I	GATATC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	313
Eco88I	CYCGRG	2 cut(s)	119, 322
EcoRII	CCWGG	2 cut(s)	105, 129
EcoRV	GATATC	1 cut(s)	56
FaeI	CATG	3 cut(s)	232, 275, 611
FaiI	YATR	7 cut(s)	188, 230, 273, 371, 387, 470, 609
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	3 cut(s)	228, 271, 607
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	236, 696, 775, 778
FokI	GGATG	1 cut(s)	646
Fsp4HI	GCNGC	4 cut(s)	236, 696, 775, 778
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	4 cut(s)	236, 696, 775, 778
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	2 cut(s)	524, 780
HapII	CCGG	6 cut(s)	82, 432, 726, 734, 741, 798
Hin1II	CATG	3 cut(s)	232, 275, 611
HpaII	CCGG	6 cut(s)	82, 432, 726, 734, 741, 798
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	226, 313
Hpy188I	TCNGA	3 cut(s)	451, 667, 811
Hpy8I	GTNNAC	2 cut(s)	226, 313
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	358, 601
HpyCH4IV	ACGT	2 cut(s)	135, 501
HpyCH4V	TGCA	2 cut(s)	265, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpySE526I	ACGT	2 cut(s)	135, 501
Hsp92II	CATG	3 cut(s)	232, 275, 611
Kpn2I	TCCGGA	1 cut(s)	733
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	328, 388, 460, 495
LmnI	GCTCC	1 cut(s)	34
LweI	GCATC	6 cut(s)	94, 162, 194, 247, 624, 682
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	135, 501
MaeIII	GTNAC	5 cut(s)	5, 281, 364, 762, 786
MalI	GATC	4 cut(s)	330, 390, 462, 497
MboI	GATC	4 cut(s)	328, 388, 460, 495
MboII	GAAGA	3 cut(s)	601, 695, 701
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	495
MluCI	AATT	2 cut(s)	17, 42
MlyI	GAGTC	4 cut(s)	373, 490, 777, 803
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	6 cut(s)	268, 331, 400, 469, 670, 673
MroI	TCCGGA	1 cut(s)	733
MroNI	GCCGGC	1 cut(s)	81
MseI	TTAA	2 cut(s)	504, 516
MslI	CAYNNNNRTG	1 cut(s)	270
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	6 cut(s)	82, 432, 726, 734, 741, 798
MspR9I	CCNGG	2 cut(s)	107, 131
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	107, 131
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	159
NaeI	GCCGGC	1 cut(s)	83
NdeII	GATC	4 cut(s)	328, 388, 460, 495
NgoMIV	GCCGGC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	139
NlaIII	CATG	3 cut(s)	232, 275, 611
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	364, 762, 786
NspI	RCATGY	2 cut(s)	232, 611
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	7 cut(s)	102, 115, 428, 446, 452, 565, 756
Pfl23II	CGTACG	1 cut(s)	672
PfoI	TCCNGGA	1 cut(s)	105
PinAI	ACCGGT	1 cut(s)	740
PkrI	GCNGC	4 cut(s)	237, 697, 776, 779
PleI	GAGTC	4 cut(s)	373, 489, 776, 802
PpsI	GAGTC	4 cut(s)	373, 489, 776, 802
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	105, 129
PspGI	CCWGG	2 cut(s)	105, 129
PspLI	CGTACG	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	504, 516
SatI	GCNGC	4 cut(s)	236, 696, 775, 778
Sau3AI	GATC	4 cut(s)	328, 388, 460, 495
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	4 cut(s)	373, 490, 777, 803
ScrFI	CCNGG	2 cut(s)	107, 131
SetI	ASST	8 cut(s)	12, 138, 145, 263, 288, 504, 645, 807
SfaNI	GCATC	6 cut(s)	94, 162, 194, 247, 624, 682
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	4 cut(s)	89, 119, 515, 638
SmoI	CTYRAG	4 cut(s)	89, 119, 515, 638
Sse9I	AATT	2 cut(s)	17, 42
SsiI	CCGC	8 cut(s)	162, 207, 235, 318, 421, 696, 774, 777
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	105, 129
TaaI	ACNGT	2 cut(s)	358, 601
TaiI	ACGT	2 cut(s)	138, 504
TaqI	TCGA	4 cut(s)	120, 377, 455, 465
TaqII	GACCGA	2 cut(s)	110, 736
TasI	AATT	2 cut(s)	17, 42
TauI	GCSGC	4 cut(s)	238, 698, 777, 780
TfiI	GAWTC	7 cut(s)	102, 115, 428, 446, 452, 565, 756
Tru1I	TTAA	2 cut(s)	504, 516
Tru9I	TTAA	2 cut(s)	504, 516
TscAI	CASTG	1 cut(s)	788
TseFI	GTSAC	3 cut(s)	364, 762, 786
Tsp45I	GTSAC	3 cut(s)	364, 762, 786
TspDTI	ATGAA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	788
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	313
XceI	RCATGY	2 cut(s)	232, 611
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.