Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Forward (+)

75711 .. 77272

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgcaccattgtaccctagctttgagtactggccttccacataagacgcttcgtcaagagaaggaaggggagtctcccaactcagcctcccagaaagagcagcccattaaaacaggcccaatccgcatcctcagctcaggagcccaagccgcagcccaagccactgccacgtcagcagtcaacgccggtcaatggtcaatcaggatgagtaacctgaacaaattggactttgctccattgagaacaactggctctggatatcacaggtgggttcgtgatgtctacctgcatctcaaggctgatggaatcctggatacgattcttgagcctagccaggacgtgctaaatgttgagcaagctcaagctttggaagcaaatagagcatccttagaggcaaataaggcgaaagccatcatcctaatgacttcatatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

145

Amino Acids

15.69

Weight (kDa)

8.79

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	124, 150
AfaI	GTAC	2 cut(s)	13, 28
AfiI	CCNNNNNNNGG	1 cut(s)	192
AhdI	GACNNNNNGTC	1 cut(s)	51
AjiI	CACGTC	2 cut(s)	171, 340
AjnI	CCWGG	2 cut(s)	309, 333
AluBI	AGCT	4 cut(s)	20, 135, 359, 365
AluI	AGCT	4 cut(s)	20, 135, 359, 365
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	31, 115
ApeKI	GCWGC	2 cut(s)	100, 152
AspS9I	GGNCC	1 cut(s)	116
BaeI	ACNNNNGTAYC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	112, 164
BccI	CCATC	2 cut(s)	296, 419
BciT130I	CCWGG	2 cut(s)	311, 335
BciVI	GTATCC	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	17, 330
BfuAI	ACCTGC	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	101, 150, 153
BlsI	GCNGC	3 cut(s)	102, 151, 154
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	311, 335
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmgBI	CACGTC	2 cut(s)	171, 340
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	311, 335
BmsI	GCATC	3 cut(s)	135, 298, 392
Bpu10I	CCTNAGC	2 cut(s)	131, 136
BpuEI	CTTGAG	3 cut(s)	278, 344, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	34, 253
BseBI	CCWGG	2 cut(s)	311, 335
BseGI	GGATG	4 cut(s)	126, 210, 383, 414
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	96, 145, 150
BseNI	ACTGG	2 cut(s)	34, 253
BseXI	GCAGC	2 cut(s)	112, 164
BshFI	GGCC	2 cut(s)	33, 117
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	33, 117
Bsp1286I	GDGCHC	1 cut(s)	145
BspACI	CCGC	2 cut(s)	124, 150
BspANI	GGCC	2 cut(s)	33, 117
BspCNI	CTCAG	3 cut(s)	95, 144, 149
BspLI	GGNNCC	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	34, 253
BssAI	RCCGGY	1 cut(s)	185
Bst2UI	CCWGG	2 cut(s)	311, 335
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	4 cut(s)	82, 131, 136, 388
BstF5I	GGATG	4 cut(s)	126, 210, 383, 414
BstMAI	GTCTC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	9 cut(s)	123, 132, 149, 158, 173, 182, 371, 380, 401
BstNI	CCWGG	2 cut(s)	311, 335
BstSCI	CCNGG	2 cut(s)	309, 333
BstV1I	GCAGC	2 cut(s)	112, 164
BsuI	GTATCC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	33, 117
BtrI	CACGTC	2 cut(s)	171, 340
BtsCI	GGATG	4 cut(s)	126, 210, 383, 414
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	12, 27
CviQI	GTAC	2 cut(s)	12, 27
DdeI	CTNAG	4 cut(s)	82, 131, 136, 388
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	309, 333
EcoRV	GATATC	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	145
FaiI	YATR	3 cut(s)	42, 430, 432
FauNDI	CATATG	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	101, 150, 153
FokI	GGATG	4 cut(s)	113, 217, 370, 401
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	101, 150, 153
FspBI	CTAG	2 cut(s)	17, 330
GluI	GCNGC	3 cut(s)	101, 150, 153
HaeIII	GGCC	2 cut(s)	33, 117
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	3 cut(s)	71, 306, 319
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	181, 283
Hpy188III	TCNNGA	6 cut(s)	56, 138, 202, 255, 275, 323
Hpy8I	GTNNAC	2 cut(s)	181, 283
HpyAV	CCTTC	3 cut(s)	44, 55, 59
HpyCH4IV	ACGT	2 cut(s)	170, 339
HpyCH4V	TGCA	2 cut(s)	4, 289
HpyF10VI	GCNNNNNNNGC	9 cut(s)	123, 132, 149, 158, 173, 182, 371, 380, 401
HpyF3I	CTNAG	4 cut(s)	82, 131, 136, 388
HpySE526I	ACGT	2 cut(s)	170, 339
LmnI	GCTCC	2 cut(s)	140, 238
Lsp1109I	GCAGC	2 cut(s)	112, 164
LweI	GCATC	3 cut(s)	135, 298, 392
MaeI	CTAG	2 cut(s)	17, 330
MaeII	ACGT	2 cut(s)	170, 339
MaeIII	GTNAC	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	97, 140, 385
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	2 cut(s)	419, 433
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	311, 335
MvaI	CCWGG	2 cut(s)	311, 335
MwoI	GCNNNNNNNGC	9 cut(s)	123, 132, 149, 158, 173, 182, 371, 380, 401
NdeI	CATATG	1 cut(s)	430
NlaIV	GGNNCC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	306, 319
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	102, 151, 154
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	309, 333
PspGI	CCWGG	2 cut(s)	309, 333
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	116
RsaI	GTAC	2 cut(s)	13, 28
RsaNI	GTAC	2 cut(s)	12, 27
RseI	CAYNNNNRTG	2 cut(s)	419, 433
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	101, 150, 153
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	311, 335
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	9 cut(s)	22, 137, 173, 216, 269, 288, 342, 361, 367
SfaNI	GCATC	3 cut(s)	135, 298, 392
SmiMI	CAYNNNNRTG	2 cut(s)	419, 433
SmlI	CTYRAG	3 cut(s)	293, 323, 360
SmoI	CTYRAG	3 cut(s)	293, 323, 360
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	2 cut(s)	124, 150
SspMI	CTAG	2 cut(s)	17, 330
StyD4I	CCNGG	2 cut(s)	309, 333
TaiI	ACGT	2 cut(s)	173, 342
TasI	AATT	1 cut(s)	221
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	306, 319
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	2 cut(s)	100, 152
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	2 cut(s)	17, 330
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.