gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000007141 |
| rosa_multiflora | Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00370290 |
| rosa_samantha | Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 9 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 57, 92, 215 |
| BciT130I | CCWGG | 1 cut(s) | 11 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 11 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 11 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BseBI | CCWGG | 1 cut(s) | 11 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 95 |
| Bst2UI | CCWGG | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 11 |
| BstSCI | CCNGG | 1 cut(s) | 9 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CviJI | RGCY | 7 cut(s) | 95, 124, 129, 155, 161, 182, 206 |
| CviKI_1 | RGCY | 7 cut(s) | 95, 124, 129, 155, 161, 182, 206 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 9 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 1 cut(s) | 102 |
| Hpy188III | TCNNGA | 3 cut(s) | 51, 71, 119 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LpnPI | CCDG | 3 cut(s) | 23, 36, 95 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MluCI | AATT | 1 cut(s) | 42 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| MspR9I | CCNGG | 1 cut(s) | 11 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 11 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 1 cut(s) | 102 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| Psp6I | CCWGG | 1 cut(s) | 9 |
| PspGI | CCWGG | 1 cut(s) | 9 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SatI | GCNGC | 1 cut(s) | 180 |
| ScrFI | CCNGG | 1 cut(s) | 11 |
| SetI | ASST | 4 cut(s) | 12, 138, 157, 163 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 1 cut(s) | 42 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 1 cut(s) | 126 |
| StyD4I | CCNGG | 1 cut(s) | 9 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 1 cut(s) | 42 |
| TfiI | GAWTC | 1 cut(s) | 102 |
| TseI | GCWGC | 1 cut(s) | 179 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 1 cut(s) | 126 |