Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017024

Physical Location & Seq

Genomic Coordinates Reverse (-)

61966254 .. 61967146

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATGAAGAAGCAGAAGCGTCTGGATATTCTGACAGCAGGATGCCGCCAGGATAGCACTGCGACCACCGGAGGCGGAGCCGCAAATAATGACGGGCAGAGGCCCGACCTAGGGTTTTCTGGAACGATATATGAGGCGCGTGAGGCACGGTCTCAAATTCGTATGAAGACTCAAGAAATCCATTCTCGATCGACCTTCTTCAACCGTACACATTACACCCTCATTACAAGAAATCACATTGCCAAGGAATGCCTGCCAAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.97

Weight (kDa)

10.13

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017024)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007141
rosa_multiflora	Rmu_sc0000161.1_g000071 Rmu_sc0000986.1_g000031 Rmu_sc0001192.1_g000024 Rmu_sc0001772.1_g000020 Rmu_sc0008622.1_g000004 Rmu_sc0015666.1_g000010 Rmu_sc0019861.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370290
rosa_samantha	Rh2BG437700 Rh2DG447500 Rh4AG284100 Rh4CG305900 Rh4DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	139
AciI	CCGC	3 cut(s)	46, 75, 81
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	110, 111
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	156
AspA2I	CCTAGG	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	102
AvrII	CCTAGG	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	46, 81
BlnI	CCTAGG	1 cut(s)	109
BlsI	GCNGC	2 cut(s)	47, 82
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	109, 243
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 111
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	50
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	109, 243
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	110, 111
BseMI	GCAATG	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	110, 111
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	188
BspACI	CCGC	3 cut(s)	46, 75, 81
BspANI	GGCC	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	109, 243
BssMI	GATC	1 cut(s)	188
BssT1I	CCWWGG	2 cut(s)	109, 243
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	150, 206
BstC8I	GCNNGC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	188
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 143
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	262
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	207
CviJI	RGCY	2 cut(s)	80, 103
CviKI_1	RGCY	2 cut(s)	80, 103
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	109, 243
Eco31I	GGTCTC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	109, 243
ErhI	CCWWGG	2 cut(s)	109, 243
FaiI	YATR	3 cut(s)	130, 132, 164
Fnu4HI	GCNGC	2 cut(s)	46, 81
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	46, 81
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	46, 81
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	4 cut(s)	23, 120, 173, 186
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	150, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 143
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	6 cut(s)	8, 24, 35, 62, 82, 105
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	110
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	3 cut(s)	19, 178, 190
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	65, 93, 127, 136, 230
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	54, 143
NdeII	GATC	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	47, 82
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	102
PvuI	CGATCG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SatI	GCNGC	2 cut(s)	46, 81
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	2 cut(s)	111, 197
SfaNI	GCATC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	3 cut(s)	46, 75, 81
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	109, 243
TaaI	ACNGT	2 cut(s)	150, 206
TaqI	TCGA	3 cut(s)	187, 191, 262
TasI	AATT	1 cut(s)	156
TauI	GCSGC	2 cut(s)	48, 83
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	20, 179
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	156
XmaJI	CCTAGG	1 cut(s)	109
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.