Rw6G023970
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016170
Physical Location & Seq
Reverse (-)
46747988 .. 46749253
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023970.1

Sequence Viewer

Length: 864 bp
ATGGCCACACCACCCTCACCCACCGCCTCGCCCTCCGCCTCCCCGGTCTCCACCACCGCCACCAAGAAGCCCCACCCGATCCCCTGGACCCACCAAGAAACGGTCCACCTAATCCAGTCCTACCAGGACAAATGGTACGAACTCCGCCGAGGTCAGCTCAAGGCCAGCCAATGGGAAGAGGTCGCCGTCACCGTCGCCGCCCGATGCGGCTACGACTACACCGAGCCCTCCAAGACCGCCACCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGTCACCGCTCCGTCAAGAAGCGCCTTGGCCTCAGCTTCGGGTCGGGTTGGCCCTACTTCGATCTCATGGAGCGGCTTGAACAGGGCCCCATGCCCATCTCCGCCAGACGGCCGTACCAGGAGGAGGAGGAGGACGACGAAGAAGCCGAAGAAGAAGAAGAAGCGGAGGATCATGGCGGCGAAGAAGAAGAGGTTGATGAGGAGGAAGAAGACAACTACAGGAAGTTGCAGAGTCTTGATTACATTCTGAGGAGACCCGCAATTGTGAACAGATTTTCTTCCGGAGCAAAAGAGGGCCACTTTCGGGACTCGGCGGCGGCGAAAAGGCCGAGGGAGGCCGCCGCAGACGACGACGGCTACTACGGCGATGTGGTGGATGGGCAGAGAGGAACAGAGATGGTGGTGGAGCTGGCGACGGAGATAAGGGGGTTTGCGAAAAGGCTGATTGGGGTGGAGAATATGAGGATGGAGATCATGAGGGAAACGGAGAGGTGTAGATTAGAGATGGAGAATAAACGGATTGATATGATTCTTCAATCGCAGCGCAAAATTGTTGATTCCATCGACAGGGCTTTTGGGCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

287

Amino Acids

33.1

Weight (kDa)

5.1

Isoelectric Point (pI)

70.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 29 - 118 2.2e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24860
fragaria_vesca FvH4_2g18920
malus_domestica MD05G1174500.v1.1 MD10G1163600.v1.1
prunus_persica Prupe.8G201900_v2.0.a1
pyrus_communis pycom05g16130
rosa_chinensis RchiOBHm_Chr6g0284711
rosa_laevigata RLG00000012726
rosa_multiflora Rmu_sc0007474.1_g000020
rosa_rugosa Rorug06G0165800
rosa_samantha Rh6AG278800 Rh6BG278900 Rh6CG281200 Rh6DG273800
rosa_wichuraiana Rw6G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 171, 259
AccBSI CCGCTC 2 cut(s) 285, 349
AccIII TCCGGA 1 cut(s) 557
AclWI GGATC 2 cut(s) 73, 453
AcoI YGGCCR 2 cut(s) 3, 386
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 2 cut(s) 137, 392
AfiI CCNNNNNNNGG 7 cut(s) 100, 171, 259, 384, 400, 580, 843
AgsI TTSAA 2 cut(s) 356, 812
AjnI CCWGG 3 cut(s) 83, 123, 393
AluBI AGCT 4 cut(s) 157, 268, 312, 685
AluI AGCT 4 cut(s) 157, 268, 312, 685
Alw26I GTCTC 2 cut(s) 52, 523
AlwI GGATC 2 cut(s) 73, 453
Aor13HI TCCGGA 1 cut(s) 557
AoxI GGCC 9 cut(s) 3, 162, 304, 326, 361, 386, 571, 602, 612
ApaI GGGCCC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 817
ArsI GACNNNNNNTTYG 1 cut(s) 833
AspLEI GCGC 2 cut(s) 300, 822
AspS9I GGNCC 6 cut(s) 87, 103, 327, 361, 362, 571
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 9, 181, 272
AvaII GGWCC 2 cut(s) 87, 103
BaeGI GKGCMC 1 cut(s) 365
BaeI ACNNNNGTAYC 2 cut(s) 374, 407
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 228, 365
BbsI GAAGAC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 829
BccI CCATC 7 cut(s) 253, 380, 647, 667, 736, 775, 845
BceAI ACGGC 5 cut(s) 170, 373, 401, 646, 655
BciT130I CCWGG 3 cut(s) 85, 125, 395
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 52, 523
BfmI CTRYAG 1 cut(s) 493
BfoI RGCGCY 1 cut(s) 301
Bme1390I CCNGG 4 cut(s) 44, 85, 125, 395
Bme18I GGWCC 2 cut(s) 87, 103
BmgT120I GGNCC 6 cut(s) 87, 103, 327, 361, 362, 571
BmiI GGNNCC 3 cut(s) 89, 363, 364
BmrFI CCNGG 4 cut(s) 44, 85, 125, 395
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 746
BsaI GGTCTC 2 cut(s) 52, 523
BsaJI CCNNGG 5 cut(s) 42, 83, 148, 301, 605
BsaWI WCCGGW 1 cut(s) 557
Bsc4I CCNNNNNNNGG 7 cut(s) 100, 171, 259, 384, 400, 580, 843
Bse1I ACTGG 2 cut(s) 115, 244
Bse8I GATNNNNATC 1 cut(s) 746
BseAI TCCGGA 1 cut(s) 557
BseBI CCWGG 3 cut(s) 85, 125, 395
BseDI CCNNGG 5 cut(s) 42, 83, 148, 301, 605
BseGI GGATG 2 cut(s) 658, 747
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 7 cut(s) 100, 171, 259, 384, 400, 580, 843
BseMII CTCAG 2 cut(s) 322, 515
BseNI ACTGG 2 cut(s) 115, 244
BseRI GAGGAG 5 cut(s) 413, 416, 419, 491, 541
BseSI GKGCMC 1 cut(s) 365
BseX3I CGGCCG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 829
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 573, 604, 614
BsiEI CGRYCG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 44, 558
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 7 cut(s) 100, 171, 259, 384, 400, 580, 843
BsmAI GTCTC 2 cut(s) 52, 523
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 573, 604, 614
Bso31I GGTCTC 2 cut(s) 52, 523
Bsp120I GGGCCC 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 228, 365
Bsp13I TCCGGA 1 cut(s) 557
Bsp143I GATC 4 cut(s) 78, 337, 445, 747
BspANI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 573, 604, 614
BspCNI CTCAG 2 cut(s) 321, 516
BspEI TCCGGA 1 cut(s) 557
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 89, 363, 364
BspPI GGATC 2 cut(s) 73, 453
BspTNI GGTCTC 2 cut(s) 52, 523
BsrBI CCGCTC 2 cut(s) 285, 349
BsrI ACTGG 2 cut(s) 115, 244
BssECI CCNNGG 5 cut(s) 42, 83, 148, 301, 605
BssMI GATC 4 cut(s) 78, 337, 445, 747
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 85, 125, 395
Bst4CI ACNGT 2 cut(s) 103, 193
Bst6I CTCTTC 2 cut(s) 171, 459
BstC8I GCNNGC 3 cut(s) 166, 275, 687
BstDEI CTNAG 2 cut(s) 308, 524
BstF5I GGATG 2 cut(s) 658, 747
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 822
BstKTI GATC 4 cut(s) 81, 340, 448, 750
BstMAI GTCTC 2 cut(s) 52, 523
BstMBI GATC 4 cut(s) 78, 337, 445, 747
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 274, 639
BstNI CCWGG 3 cut(s) 85, 125, 395
BstSCI CCNGG 4 cut(s) 42, 83, 123, 393
BstSFI CTRYAG 1 cut(s) 493
BstSLI GKGCMC 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 829
BstV2I GAAGAC 1 cut(s) 492
BstZI CGGCCG 1 cut(s) 386
BsuRI GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 573, 604, 614
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 2 cut(s) 658, 747
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 166, 275, 687
CciI TCATGA 1 cut(s) 750
CfoI GCGC 2 cut(s) 300, 822
Cfr13I GGNCC 6 cut(s) 87, 103, 327, 361, 362, 571
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 136, 391
CviAII CATG 4 cut(s) 343, 367, 449, 751
CviQI GTAC 2 cut(s) 136, 391
DdeI CTNAG 2 cut(s) 308, 524
DpnI GATC 4 cut(s) 80, 339, 447, 749
DpnII GATC 4 cut(s) 78, 337, 445, 747
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 3, 386
EagI CGGCCG 1 cut(s) 386
Eam1104I CTCTTC 2 cut(s) 171, 459
EarI CTCTTC 2 cut(s) 171, 459
EciI GGCGGA 4 cut(s) 25, 134, 260, 367
EclXI CGGCCG 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 228, 365
Eco31I GGTCTC 2 cut(s) 52, 523
Eco47I GGWCC 2 cut(s) 87, 103
Eco52I CGGCCG 1 cut(s) 386
EcoO109I RGGNCCY 2 cut(s) 361, 362
EcoRII CCWGG 3 cut(s) 83, 123, 393
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 2 cut(s) 228, 365
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 4 cut(s) 346, 370, 452, 754
FaiI YATR 6 cut(s) 344, 368, 450, 737, 752, 803
FaqI GGGAC 1 cut(s) 596
FatI CATG 4 cut(s) 342, 366, 448, 750
FauI CCCGC 1 cut(s) 541
FokI GGATG 2 cut(s) 665, 754
FriOI GRGCYC 2 cut(s) 228, 365
GlaI GCGC 2 cut(s) 299, 821
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 9 cut(s) 5, 164, 306, 328, 363, 388, 573, 604, 614
HapII CCGG 2 cut(s) 44, 558
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 300, 822
Hin1II CATG 4 cut(s) 346, 370, 452, 754
Hin6I GCGC 2 cut(s) 298, 820
HinP1I GCGC 2 cut(s) 298, 820
HinfI GANTC 4 cut(s) 508, 584, 805, 833
HpaII CCGG 2 cut(s) 44, 558
HphI GGTGA 3 cut(s) 9, 181, 272
Hpy166II GTNNAC 2 cut(s) 106, 544
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 5 cut(s) 292, 512, 558, 581, 751
Hpy8I GTNNAC 2 cut(s) 106, 544
Hpy99I CGWCG 5 cut(s) 197, 416, 629, 632, 694
HpyCH4III ACNGT 2 cut(s) 103, 193
HpyCH4V TGCA 1 cut(s) 505
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 639
HpyF3I CTNAG 2 cut(s) 308, 524
Hsp92II CATG 4 cut(s) 346, 370, 452, 754
HspAI GCGC 2 cut(s) 298, 820
Kpn2I TCCGGA 1 cut(s) 557
Kzo9I GATC 4 cut(s) 78, 337, 445, 747
LmnI GCTCC 5 cut(s) 273, 290, 346, 560, 682
Lsp1109I GCAGC 1 cut(s) 829
LweI GCATC 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 187, 278
MalI GATC 4 cut(s) 80, 339, 447, 749
MbiI CCGCTC 2 cut(s) 285, 349
MboI GATC 4 cut(s) 78, 337, 445, 747
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 2 cut(s) 228, 365
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 537, 825
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 517, 578
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 557
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 44, 558
MspR9I CCNGG 4 cut(s) 44, 85, 125, 395
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 3 cut(s) 85, 125, 395
MwoI GCNNNNNNNGC 2 cut(s) 274, 639
NciI CCSGG 1 cut(s) 44
NdeII GATC 4 cut(s) 78, 337, 445, 747
NlaIII CATG 4 cut(s) 346, 370, 452, 754
NlaIV GGNNCC 3 cut(s) 89, 363, 364
NmeAIII GCCGAG 3 cut(s) 173, 566, 630
NmuCI GTSAC 2 cut(s) 187, 278
PagI TCATGA 1 cut(s) 750
PcsI WCGNNNNNNNCGW 4 cut(s) 189, 219, 420, 593
PfeI GAWTC 2 cut(s) 805, 833
PflMI CCANNNNNTGG 2 cut(s) 171, 259
PleI GAGTC 2 cut(s) 516, 578
PpsI GAGTC 2 cut(s) 516, 578
Psp6I CCWGG 3 cut(s) 83, 123, 393
PspGI CCWGG 3 cut(s) 83, 123, 393
PspN4I GGNNCC 3 cut(s) 89, 363, 364
PspOMI GGGCCC 1 cut(s) 361
PspPI GGNCC 6 cut(s) 87, 103, 327, 361, 362, 571
RsaI GTAC 2 cut(s) 137, 392
RsaNI GTAC 2 cut(s) 136, 391
Sau3AI GATC 4 cut(s) 78, 337, 445, 747
Sau96I GGNCC 6 cut(s) 87, 103, 327, 361, 362, 571
SchI GAGTC 2 cut(s) 517, 578
ScrFI CCNGG 4 cut(s) 44, 85, 125, 395
SduI GDGCHC 2 cut(s) 228, 365
SetI ASST 9 cut(s) 111, 154, 159, 183, 270, 314, 471, 687, 770
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 493
SinI GGWCC 2 cut(s) 87, 103
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 537, 825
StyD4I CCNGG 4 cut(s) 42, 83, 123, 393
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 103, 193
TaqI TCGA 2 cut(s) 336, 840
TasI AATT 2 cut(s) 537, 825
TauI GCSGC 9 cut(s) 200, 210, 252, 352, 456, 593, 596, 617, 620
TfiI GAWTC 2 cut(s) 805, 833
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 2 cut(s) 187, 278
TseI GCWGC 1 cut(s) 817
Tsp45I GTSAC 2 cut(s) 187, 278
TspGWI ACGGA 4 cut(s) 277, 707, 776, 808
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 2 cut(s) 171, 259
VpaK11BI GGWCC 2 cut(s) 87, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.